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Report for CCDS1899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1899.1 Public Homo sapiens 2 C2orf42 24 110 108 CCDS HistoryNCBI Gene:54980Re-query CCDS DB by CCDS ID:1899.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1899.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264434.7 ENSP00000264434.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264434.7Link to Ensembl Protein Viewer:ENSP00000264434.2Re-query CCDS DB by Nucleotide ID:ENST00000264434Re-query CCDS DB by Protein ID:ENSP00000264434
Original member Current member EBI ENST00000420306.1 ENSP00000404515.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420306.1Link to Ensembl Protein Viewer:ENSP00000404515.1Re-query CCDS DB by Nucleotide ID:ENST00000420306Re-query CCDS DB by Protein ID:ENSP00000404515
Original member Current member NCBI NM_001348758.2 NP_001335687.1 Accepted alive Link to Nucleotide Sequence:NM_001348758.2Link to Protein Sequence:NP_001335687.1Re-query CCDS DB by Nucleotide ID:NM_001348758Re-query CCDS DB by Protein ID:NP_001335687Link to BLAST:NP_001335687.1
Original member Current member NCBI NM_001348759.2 NP_001335688.1 Accepted alive Link to Nucleotide Sequence:NM_001348759.2Link to Protein Sequence:NP_001335688.1Re-query CCDS DB by Nucleotide ID:NM_001348759Re-query CCDS DB by Protein ID:NP_001335688Link to BLAST:NP_001335688.1
Original member Current member NCBI NM_001348760.2 NP_001335689.1 Accepted alive Link to Nucleotide Sequence:NM_001348760.2Link to Protein Sequence:NP_001335689.1Re-query CCDS DB by Nucleotide ID:NM_001348760Re-query CCDS DB by Protein ID:NP_001335689Link to BLAST:NP_001335689.1
Original member Current member NCBI NM_001348761.2 NP_001335690.1 Accepted alive Link to Nucleotide Sequence:NM_001348761.2Link to Protein Sequence:NP_001335690.1Re-query CCDS DB by Nucleotide ID:NM_001348761Re-query CCDS DB by Protein ID:NP_001335690Link to BLAST:NP_001335690.1
Original member Current member NCBI NM_001348762.2 NP_001335691.1 Accepted alive Link to Nucleotide Sequence:NM_001348762.2Link to Protein Sequence:NP_001335691.1Re-query CCDS DB by Nucleotide ID:NM_001348762Re-query CCDS DB by Protein ID:NP_001335691Link to BLAST:NP_001335691.1
Original member Current member NCBI NM_001348763.2 NP_001335692.1 Accepted alive Link to Nucleotide Sequence:NM_001348763.2Link to Protein Sequence:NP_001335692.1Re-query CCDS DB by Nucleotide ID:NM_001348763Re-query CCDS DB by Protein ID:NP_001335692Link to BLAST:NP_001335692.1
Original member Current member NCBI NM_001348764.2 NP_001335693.1 Accepted alive Link to Nucleotide Sequence:NM_001348764.2Link to Protein Sequence:NP_001335693.1Re-query CCDS DB by Nucleotide ID:NM_001348764Re-query CCDS DB by Protein ID:NP_001335693Link to BLAST:NP_001335693.1
Original member Current member NCBI NM_017880.3 NP_060350.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017880.3Link to Protein Sequence:NP_060350.1Re-query CCDS DB by Nucleotide ID:NM_017880Re-query CCDS DB by Protein ID:NP_060350Link to BLAST:NP_060350.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335687.1 574 Q9NWW7 574 100% 0 0
NP_001335688.1 574 Q9NWW7 574 100% 0 0
NP_001335689.1 574 Q9NWW7 574 100% 0 0
NP_001335690.1 574 Q9NWW7 574 100% 0 0
NP_001335691.1 574 Q9NWW7 574 100% 0 0
NP_001335692.1 574 Q9NWW7 574 100% 0 0
NP_001335693.1 574 Q9NWW7 574 100% 0 0
NP_060350.1 574 Q9NWW7 574 100% 0 0

Chromosomal Locations for CCDS 1899.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 70150356 70150564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70160625 70160787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70165092 70165192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70165528 70165635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70169557 70169661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70175673 70175777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70179532 70179642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70181163 70181985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGAACCAAATTCTCTGAGGACTAAAGTCCCAGCTTTCTTATCTGATTTGGGGAAGGCCACATTGAGGG
GAATCAGAAAGTGTCCCCGATGTGGCACATACAATGGAACCCGGGGACTGAGCTGTAAGAACAAGACATG
TGGAACCATATTCCGCTACGGTGCACGCAAGCAGCCTAGTGTTGAAGCTGTCAAAATCATTACAGGCTCT
GATCTTCAGGTCTACTCAGTGCGGCAAAGAGACCGGGGCCCTGATTACCGATGCTTTGTGGAGCTCGGGG
TTTCAGAGACAACAATCCAGACAGTGGATGGGACGATCATCACTCAGCTGAGCTCTGGACGGTGTTATGT
CCCCTCATGCCTGAAAGCTGCCACTCAAGGCGTTGTGGAAAACCAGTGCCAGCACATCAAGCTGGCGGTG
AACTGCCAGGCAGAGGCCACCCCTCTGACCCTGAAGAGCTCGGTCCTGAATGCAATGCAGGCCTCCCCGG
AAACCAAACAGACCATCTGGCAGTTGGCCACGGAACCCACAGGTCCTCTGGTGCAGAGAATTACTAAAAA
CATCTTGGTGGTGAAATGCAAGGCAAGCCAGAAGCACAGTTTGGGGTATTTGCATACATCTTTTGTGCAG
AAAGTCAGTGGCAAAAGCTTGCCTGAGCGCCGCTTCTTCTGCTCCTGTCAGACTCTGAAATCGCACAAGT
CAAATGCCTCCAAGGATGAGACAGCCCAGAGATGCATTCATTTCTTTGCTTGCATCTGTGCCTTTGCCAG
TGATGAGACACTGGCTCAGGAATTCTCAGACTTCCTAAATTTTGATTCCAGCGGTCTTAAAGAGATTATT
GTACCCCAGTTAGGTTGCCATTCAGAATCAACAGTATCTGCTTGTGAGTCTACTGCCTCTAAGTCAAAGA
AGAGGAGAAAGGATGAAGTATCTGGTGCACAGATGAACAGTTCACTACTGCCTCAAGATGCAGTGAGCAG
TAATCTAAGGAAAAGTGGCCTGAAAAAGCCTGTGGTTGCTTCCTCGTTAAAAAGGCAGGCCTGTGGTCAG
CTGTTAGATGAGGCACAAGTGACTTTATCCTTCCAAGACTGGCTGGCCAGTGTCACAGAACGCATCCATC
AAACCATGCACTATCAGTTTGATGGCAAACCAGAACCATTGGTGTTCCACATTCCTCAGTCATTTTTTGA
TGCCCTGCAACAAAGAATATCTATAGGAAGTGCAAAAAAACGGCTCCCCAACTCCACCACAGCTTTTGTT
CGGAAAGATGCCTTGCCACTGGGAACCTTTTCCAAGTATACTTGGCATATCACTAATATCCTGCAAGTTA
AACAAATCTTAGATACCCCAGAGATGCCCTTGGAAATCACCCGTAGCTTTATCCAGAACCGAGATGGGAC
TTATGAGCTATTTAAATGCCCTAAAGTGGAAGTAGAAAGCATAGCAGAAACCTACGGTCGTATAGAAAAA
CAACCAGTGCTGCGACCCTTGGAACTAAAAACTTTTCTCAAAGTTGGCAACACTTCCCCAGATCAAAAGG
AGCCAACACCTTTCATCATCGAGTGGATCCCAGATATCCTTCCCCAATCTAAGATTGGCGAGCTGCGGAT
CAAGTTTGAGTATGGCCACCACCGGAATGGGCATGTGGCGGAGTACCAAGACCAGCGGCCCCCCTTGGAC
CAGCCCTTGGAACTGGCCCCTCTGACCACTATTACTTTCCCTTAA

Translation (574 aa):
MEPNSLRTKVPAFLSDLGKATLRGIRKCPRCGTYNGTRGLSCKNKTCGTIFRYGARKQPSVEAVKIITGS
DLQVYSVRQRDRGPDYRCFVELGVSETTIQTVDGTIITQLSSGRCYVPSCLKAATQGVVENQCQHIKLAV
NCQAEATPLTLKSSVLNAMQASPETKQTIWQLATEPTGPLVQRITKNILVVKCKASQKHSLGYLHTSFVQ
KVSGKSLPERRFFCSCQTLKSHKSNASKDETAQRCIHFFACICAFASDETLAQEFSDFLNFDSSGLKEII
VPQLGCHSESTVSACESTASKSKKRRKDEVSGAQMNSSLLPQDAVSSNLRKSGLKKPVVASSLKRQACGQ
LLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFV
RKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVESIAETYGRIEK
QPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVAEYQDQRPPLD
QPLELAPLTTITFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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