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Report for CCDS315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
315.1 Public Homo sapiens 1 XKR8 24 110 108 CCDS HistoryNCBI Gene:55113Re-query CCDS DB by CCDS ID:315.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 315.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373884.6 ENSP00000362991.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373884.6Link to Ensembl Protein Viewer:ENSP00000362991.5Re-query CCDS DB by Nucleotide ID:ENST00000373884Re-query CCDS DB by Protein ID:ENSP00000362991
Original member Current member NCBI NM_018053.4 NP_060523.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018053.4Link to Protein Sequence:NP_060523.2Re-query CCDS DB by Nucleotide ID:NM_018053Re-query CCDS DB by Protein ID:NP_060523Link to BLAST:NP_060523.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060523.2 395 Q9H6D3 395 100% 0 0

Chromosomal Locations for CCDS 315.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27960070 27960362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27963497 27963693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27966503 27967200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGCCCTGGTCGTCCCGCGGCGCCCTCCTTCGGGACCTGGTCCTGGGCGTGCTGGGCACCGCCGCCTTCC
TGCTCGACCTGGGCACCGACCTGTGGGCCGCCGTCCAGTATGCGCTCGGCGGCCGCTACCTGTGGGCGGC
GCTGGTGCTGGCGCTGCTGGGCCTGGCCTCCGTGGCGCTGCAGCTCTTCAGCTGGCTCTGGCTGCGCGCT
GACCCTGCCGGCCTGCACGGGTCGCAGCCCCCGCGCCGCTGCCTGGCGCTGCTGCATCTCCTGCAGCTGG
GTTACCTGTACAGGTGCGTGCAGGAGCTGCGGCAGGGGCTGCTGGTGTGGCAGCAGGAGGAGCCCTCTGA
GTTTGACTTGGCCTACGCCGACTTCCTCGCCCTGGACATCAGCATGCTGCGGCTCTTCGAGACCTTCTTG
GAGACGGCACCACAGCTCACGCTGGTGCTGGCCATCATGCTGCAGAGTGGCCGGGCTGAGTACTACCAGT
GGGTTGGCATCTGCACATCCTTCCTGGGCATCTCGTGGGCACTGCTCGACTACCACCGGGCCTTGCGCAC
CTGCCTCCCCTCCAAGCCGCTCCTGGGCCTGGGCTCCTCCGTGATCTACTTCCTGTGGAACCTGCTGCTG
CTGTGGCCCCGAGTCCTGGCTGTGGCCCTGTTCTCAGCCCTCTTCCCCAGCTATGTGGCCCTGCACTTCC
TGGGCCTGTGGCTGGTACTGCTGCTCTGGGTCTGGCTTCAGGGCACAGACTTCATGCCGGACCCCAGCTC
CGAGTGGCTGTACCGGGTGACGGTGGCCACCATCCTCTATTTCTCCTGGTTCAACGTGGCTGAGGGCCGC
ACCCGAGGCCGGGCCATCATCCACTTCGCCTTCCTCCTGAGTGACAGCATTCTCCTGGTGGCCACCTGGG
TGACTCATAGCTCCTGGCTGCCCAGCGGGATTCCACTGCAGCTGTGGCTGCCTGTGGGATGCGGCTGCTT
CTTTCTGGGCCTGGCTCTGCGGCTTGTGTACTACCACTGGCTGCACCCTAGCTGCTGCTGGAAGCCCGAC
CCTGACCAGGTAGACGGGGCCCGGAGTCTGCTTTCTCCAGAGGGGTATCAGCTGCCTCAGAACAGGCGCA
TGACCCATTTAGCACAGAAGTTTTTCCCCAAGGCTAAGGATGAGGCTGCTTCGCCAGTGAAGGGATAG

Translation (395 aa):
MPWSSRGALLRDLVLGVLGTAAFLLDLGTDLWAAVQYALGGRYLWAALVLALLGLASVALQLFSWLWLRA
DPAGLHGSQPPRRCLALLHLLQLGYLYRCVQELRQGLLVWQQEEPSEFDLAYADFLALDISMLRLFETFL
ETAPQLTLVLAIMLQSGRAEYYQWVGICTSFLGISWALLDYHRALRTCLPSKPLLGLGSSVIYFLWNLLL
LWPRVLAVALFSALFPSYVALHFLGLWLVLLLWVWLQGTDFMPDPSSEWLYRVTVATILYFSWFNVAEGR
TRGRAIIHFAFLLSDSILLVATWVTHSSWLPSGIPLQLWLPVGCGCFFLGLALRLVYYHWLHPSCCWKPD
PDQVDGARSLLSPEGYQLPQNRRMTHLAQKFFPKAKDEAASPVKG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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