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Report for CCDS6768.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6768.1 Public Homo sapiens 9 TMEM38B 24 110 108 CCDS HistoryNCBI Gene:55151Re-query CCDS DB by CCDS ID:6768.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6768.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374692.8 ENSP00000363824.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374692.8Link to Ensembl Protein Viewer:ENSP00000363824.3Re-query CCDS DB by Nucleotide ID:ENST00000374692Re-query CCDS DB by Protein ID:ENSP00000363824
Original member Current member NCBI NM_018112.3 NP_060582.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018112.3Link to Protein Sequence:NP_060582.1Re-query CCDS DB by Nucleotide ID:NM_018112Re-query CCDS DB by Protein ID:NP_060582Link to BLAST:NP_060582.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060582.1 291 Q9NVV0 291 100% 0 0

Chromosomal Locations for CCDS 6768.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 105694661 105694772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105705597 105705753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105721537 105721721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105722534 105722621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105748073 105748190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105773865 105774080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGATTCTCCATGGGACGAGTTGGCTCTGGCCTTCTCCCGCACGTCCATGTTTCCCTTTTTTGACATCG
CGCACTATCTAGTGTCAGTGATGGCGGTGAAACGTCAGCCGGGAGCAGCTGCATTGGCATGGAAGAATCC
TATTTCAAGCTGGTTTACTGCTATGCTCCACTGTTTTGGTGGAGGAATTTTATCCTGTCTACTGCTTGCA
GAGCCTCCATTGAAGTTTCTTGCAAACCACACTAACATATTACTGGCATCTTCAATCTGGTATATTACAT
TTTTTTGCCCGCATGACCTAGTTTCCCAGGGCTATTCATATCTACCTGTTCAACTACTGGCTTCGGGAAT
GAAGGAAGTGACCAGAACTTGGAAAATAGTAGGTGGAGTCACACATGCTAATAGCTATTACAAAAATGGC
TGGATAGTCATGATAGCTATTGGATGGGCCCGAGGTGCAGGTGGTACCATTATAACGAATTTTGAGAGGT
TGGTAAAAGGAGATTGGAAACCAGAAGGTGATGAATGGCTGAAGATGTCATACCCTGCCAAGGTAACCCT
GCTGGGGTCAGTTATCTTCACATTCCAGCACACCCAGCATCTGGCAATATCAAAGCATAATCTTATGTTC
CTTTATACCATCTTTATTGTGGCCACAAAGATAACCATGATGACTACACAGACTTCTACTATGACATTTG
CTCCTTTTGAGGATACATTGAGTTGGATGCTATTTGGCTGGCAGCAGCCGTTTTCATCATGTGAGAAGAA
AAGTGAAGCAAAGTCACCTTCCAATGGCGTTGGGTCATTGGCCTCAAAGCCGGTAGATGTTGCCTCAGAT
AATGTTAAAAAGAAACATACTAAGAAGAATGAATAA

Translation (291 aa):
MDSPWDELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAMLHCFGGGILSCLLLA
EPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEVTRTWKIVGGVTHANSYYKNG
WIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEWLKMSYPAKVTLLGSVIFTFQHTQHLAISKHNLMF
LYTIFIVATKITMMTTQTSTMTFAPFEDTLSWMLFGWQQPFSSCEKKSEAKSPSNGVGSLASKPVDVASD
NVKKKHTKKNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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