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Report for CCDS9418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9418.1 Public Homo sapiens 13 RCBTB1 24 110 108 CCDS HistoryNCBI Gene:55213Re-query CCDS DB by CCDS ID:9418.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9418.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258646.3 ENSP00000258646.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000258646.3Link to Ensembl Protein Viewer:ENSP00000258646.3Re-query CCDS DB by Nucleotide ID:ENST00000258646Re-query CCDS DB by Protein ID:ENSP00000258646
Original member Current member EBI ENST00000378302.7 ENSP00000367552.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378302.7Link to Ensembl Protein Viewer:ENSP00000367552.2Re-query CCDS DB by Nucleotide ID:ENST00000378302Re-query CCDS DB by Protein ID:ENSP00000367552
Original member Current member NCBI NM_001352500.2 NP_001339429.1 Accepted alive Link to Nucleotide Sequence:NM_001352500.2Link to Protein Sequence:NP_001339429.1Re-query CCDS DB by Nucleotide ID:NM_001352500Re-query CCDS DB by Protein ID:NP_001339429Link to BLAST:NP_001339429.1
Original member Current member NCBI NM_001352501.2 NP_001339430.1 Accepted alive Link to Nucleotide Sequence:NM_001352501.2Link to Protein Sequence:NP_001339430.1Re-query CCDS DB by Nucleotide ID:NM_001352501Re-query CCDS DB by Protein ID:NP_001339430Link to BLAST:NP_001339430.1
Original member Current member NCBI NM_001352502.2 NP_001339431.1 Accepted alive Link to Nucleotide Sequence:NM_001352502.2Link to Protein Sequence:NP_001339431.1Re-query CCDS DB by Nucleotide ID:NM_001352502Re-query CCDS DB by Protein ID:NP_001339431Link to BLAST:NP_001339431.1
Original member Current member NCBI NM_001352503.2 NP_001339432.1 Accepted alive Link to Nucleotide Sequence:NM_001352503.2Link to Protein Sequence:NP_001339432.1Re-query CCDS DB by Nucleotide ID:NM_001352503Re-query CCDS DB by Protein ID:NP_001339432Link to BLAST:NP_001339432.1
Original member Current member NCBI NM_018191.4 NP_060661.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018191.4Link to Protein Sequence:NP_060661.3Re-query CCDS DB by Nucleotide ID:NM_018191Re-query CCDS DB by Protein ID:NP_060661Link to BLAST:NP_060661.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339429.1 531 Q8NDN9-1 531 100% 0 0
NP_001339430.1 531 Q8NDN9-1 531 100% 0 0
NP_001339431.1 531 Q8NDN9-1 531 100% 0 0
NP_001339432.1 531 Q8NDN9-1 531 100% 0 0
NP_060661.3 531 Q8NDN9-1 531 100% 0 0

Chromosomal Locations for CCDS 9418.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49534122 49534262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49540876 49541006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49541676 49541827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49544737 49544863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49549458 49549648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49551326 49551468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49552178 49552285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49555515 49555673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49559918 49560084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49566618 49566768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49567154 49567279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGTGGATGTCGGAAAGTGGCCCATCTTCACTCTACTCTCCCCTCAAGAGATCGCGTCTATTCGGAAGG
CGTGTGTCTTCGGCACCTCAGCCAGTGAAGCACTGTACGTTACTGACAATGATGAGGTCTTTGTATTTGG
ACTGAACTATAGTAACTGTCTAGGAACTGGAGATAACCAGAGTACACTTGTACCCAAAAAGCTAGAAGGC
TTATGTGGAAAGAAGATTAAAAGCCTCAGTTACGGGAGTGGACCACATGTTCTTCTCAGCACCGAAGATG
GAGTGGTTTATGCCTGGGGCCACAATGGATATAGCCAGCTTGGGAATGGGACGACCAACCAAGGCATTGC
TCCCGTCCAGGTCTGTACCAATCTCTTGATCAAGCAAGTGGTGGAAGTAGCTTGTGGCTCACATCATTCA
ATGGCTCTGGCAGCTGATGGAGAGGTGTTTGCTTGGGGTTATAACAACTGTGGCCAAGTGGGATCAGGTT
CTACAGCAAATCAACCAACTCCTCGAAAAGTTACAAACTGTTTACATATTAAGAGGGTAGTTGGCATTGC
CTGTGGTCAGACTTCATCCATGGCTGTTCTGGACAATGGCGAGGTATATGGCTGGGGTTACAATGGCAAC
GGTCAGCTGGGCCTGGGAAACAATGGCAACCAGCTGACCCCTGTGAGAGTGGCAGCTTTGCACAGCGTGT
GTGTGAACCAGATTGTCTGCGGTTACGCACATACTCTAGCACTAACAGATGAGGGCTTGCTGTATGCCTG
GGGAGCTAACACATATGGGCAGCTGGGAACTGGCAATAAAAATAACCTGCTAAGCCCAGCACACATCATG
GTGGAGAAAGAAAGGGTGGTAGAGATTGCAGCCTGTCACTCTGCCCACACGTCTGCAGCCAAGACGCAGG
GTGGGCACGTGTACATGTGGGGCCAGTGCCGGGGTCAGTCCGTGATCCTCCCGCACCTCACCCACTTCTC
CTGCACCGACGACGTGTTTGCCTGCTTTGCCACTCCCGCCGTCTCGTGGCGCCTCCTGTCTGTGGAGCAT
GAAGACTTTTTAACAGTTGCAGAGTCACTGAAGAAAGAATTTGATAGTCCAGAAACTGCTGATCTGAAGT
TTCGAATTGATGGAAAATATATTCATGTCCATAAAGCTGTTTTGAAAATCAGGTGTGAGCATTTTCGATC
CATGTTCCAGTCGTATTGGAATGAAGACATGAAGGAAGTGATAGAAATCGATCAGTTTTCTTACCCAGTG
TATCGTGCCTTTCTCCAGTACCTCTACACAGACACAGTCGACCTGCCGCCAGAAGATGCTATAGGTCTTC
TGGATTTGGCGACATCTTACTGTGAAAACAGACTGAAAAAACTTTGTCAGCACATTATCAAGAGAGGAAT
TACTGTGGAGAATGCCTTTTCGCTATTCTCTGCTGCAGTCAGATATGATGCAGAGGATTTAGAAGAATTC
TGCTTTAAGTTTTGCATCAATCATTTGACAGAAGTTACACAGACTGCAGCATTTTGGCAAATGGATGGCC
CTCTGCTAAAGGAATTCATTGCTAAAGCCAGTAAATGTGGAGCCTTTAAGAACTGA

Translation (531 aa):
MVDVGKWPIFTLLSPQEIASIRKACVFGTSASEALYVTDNDEVFVFGLNYSNCLGTGDNQSTLVPKKLEG
LCGKKIKSLSYGSGPHVLLSTEDGVVYAWGHNGYSQLGNGTTNQGIAPVQVCTNLLIKQVVEVACGSHHS
MALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNCLHIKRVVGIACGQTSSMAVLDNGEVYGWGYNGN
GQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLALTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIM
VEKERVVEIAACHSAHTSAAKTQGGHVYMWGQCRGQSVILPHLTHFSCTDDVFACFATPAVSWRLLSVEH
EDFLTVAESLKKEFDSPETADLKFRIDGKYIHVHKAVLKIRCEHFRSMFQSYWNEDMKEVIEIDQFSYPV
YRAFLQYLYTDTVDLPPEDAIGLLDLATSYCENRLKKLCQHIIKRGITVENAFSLFSAAVRYDAEDLEEF
CFKFCINHLTEVTQTAAFWQMDGPLLKEFIAKASKCGAFKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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