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Report for CCDS42.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42.3 Public Homo sapiens 1 PANK4 24 110 108 CCDS HistoryNCBI Gene:55229Re-query CCDS DB by CCDS ID:42.3See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 42.2
The coding region has been updated to shorten the N-terminus to one that is more supported by conservation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378466.9 ENSP00000367727.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378466.9Link to Ensembl Protein Viewer:ENSP00000367727.5Re-query CCDS DB by Nucleotide ID:ENST00000378466Re-query CCDS DB by Protein ID:ENSP00000367727
Original member Current member NCBI NM_018216.4 NP_060686.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018216.4Link to Protein Sequence:NP_060686.3Re-query CCDS DB by Nucleotide ID:NM_018216Re-query CCDS DB by Protein ID:NP_060686Link to BLAST:NP_060686.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060686.3 773 Q9NVE7 773 100% 0 0

Chromosomal Locations for CCDS 42.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 2508847 2509060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2509862 2509930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2510057 2510157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2510678 2510782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2511338 2511387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2511628 2511683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2512888 2513039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2514002 2514089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2514354 2514466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2515562 2515717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2518164 2518264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2518516 2518597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2519143 2519324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2519801 2519954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2520322 2520414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2520723 2520906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2521101 2521315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2521718 2521800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2526464 2526587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2322 nt):
ATGGCGGAGTGTGGAGCGAGCGGCAGCGGGAGCAGCGGGGACAGTCTGGACAAGAGCATCACGCTGCCCC
CCGACGAGATCTTCCGCAACCTGGAGAACGCCAAGCGCTTCGCCATCGACATAGGCGGGTCGTTAACCAA
GCTGGCCTACTATTCAACGGTACAGCACAAAGTCGCCAAGGTGCGGTCTTTCGACCACTCCGGAAAGGAC
ACAGAACGTGAACATGAGCCGCCCTATGAGATTTCAGTTCAAGAAGAGATCACTGCTCGACTGCACTTCA
TTAAGTTTGAGAATACCTACATCGAAGCCTGCCTGGACTTCATCAAAGACCATCTCGTCAACACAGAGAC
CAAGGTCATCCAGGCGACCGGGGGCGGGGCCTACAAGTTCAAAGACCTCATCGAAGAGAAGCTGCGGCTG
AAAGTCGACAAGGAGGACGTGATGACGTGCCTGATTAAGGGGTGCAACTTCGTGCTCAAGAACATCCCCC
ATGAGGCCTTCGTGTACCAGAAGGATTCCGACCCTGAGTTCCGGTTCCAGACCAACCACCCCCACATTTT
CCCCTATCTTCTTGTCAATATCGGCTCTGGAGTCTCCATCGTGAAGGTGGAGACGGAGGACAGGTTCGAG
TGGGTCGGCGGCAGCTCCATTGGAGGCGGCACCTTCTGGGGGCTTGGCGCTCTGCTCACCAAAACGAAGA
AGTTTGACGAGCTCCTGCACCTGGCCTCGAGGGGCCAGCACAGCAATGTGGACATGCTGGTGCGGGACGT
CTACGGCGGCGCCCACCAGACTCTCGGGCTGAGCGGGAACCTCATCGCCAGCAGCTTCGGGAAGTCGGCC
ACCGCCGACCAAGAGTTCTCCAAAGAAGACATGGCGAAGAGCCTGCTGCACATGATCAGCAACGACATTG
GGCAGCTGGCCTGCCTCCACGCACGGCTGCACAGCCTGGACCGCGTGTACTTTGGAGGCTTCTTTATCCG
GGGCCACCCCGTGACCATGCGCACCATCACCTATAGCATCAACTTCTTCTCCAAGGGGGAAGTGCAGGCG
CTGTTTCTGAGGCACGAAGGCTACCTGGGAGCCATCGGAGCGTTCCTGAAAGGAGCTGAGCAGGACAATC
CTAACCAGTACAGCTGGGGAGAGAACTATGCAGGCAGCTCCGGGCTGATGAGTGCATCACCCGAGCTCGG
CCCGGCGCAGCGGGCGCGGAGTGGCACTTTTGACTTGCTGGAAATGGACCGGCTGGAGAGGCCACTGGTT
GACCTGCCGCTCCTCCTGGACCCGCCCTCCTACGTGCCCGACACGGTGGACCTCACCGATGACGCTCTGG
CCCGAAAATACTGGCTCACCTGCTTTGAGGAGGCCCTGGACGGGGTAGTGAAGCGCGCAGTGGCGAGCCA
GCCAGACTCTGTGGATGCAGCCGAGAGGGCGGAGAAGTTCCGGCAGAAGTACTGGAACAAGCTTCAGACC
CTGAGGCAGCAGCCCTTCGCCTATGGGACCCTGACCGTGCGCAGCCTGCTGGACACCAGGGAGCACTGTC
TGAACGAGTTCAACTTCCCGGATCCCTACTCCAAAGTGAAGCAGCGGGAGAATGGCGTGGCGCTGAGGTG
CTTCCCCGGGGTCGTGCGCTCCCTGGACGCGCTGGGCTGGGAGGAACGGCAGCTGGCGCTGGTGAAAGGC
CTCCTGGCGGGGAATGTCTTCGACTGGGGGGCCAAAGCCGTGTCTGCTGTCCTTGAATCCGACCCCTACT
TTGGGTTTGAAGAAGCAAAGAGGAAGTTACAAGAAAGACCCTGGCTCGTGGATTCCTACAGCGAGTGGCT
TCAGAGATTAAAGGGGCCCCCTCATAAATGTGCCTTAATTTTCGCAGATAACAGTGGAATAGACATCATT
TTGGGAGTCTTCCCCTTTGTCAGGGAGCTACTCCTTAGAGGGACAGAGGTCATCCTGGCGTGCAACTCAG
GCCCCGCCCTGAACGACGTGACCCACAGCGAGTCCCTCATCGTGGCAGAGCGTATTGCGGGCATGGACCC
TGTCGTGCACTCTGCGCTCCAGGAAGAGAGGCTGCTGCTGGTGCAGACGGGCTCCAGCTCCCCGTGCCTC
GACCTCAGCCGCCTGGATAAGGGGCTGGCCGCACTGGTGCGGGAGCGTGGCGCGGATCTGGTGGTCATCG
AGGGCATGGGCCGTGCTGTCCACACAAACTACCACGCAGCCCTGCGCTGCGAGAGCCTCAAGCTGGCCGT
CATCAAGAACGCGTGGCTGGCCGAGCGGCTGGGCGGCCGGCTCTTCAGCGTCATCTTCAAGTACGAGGTC
CCAGCCGAGTGA

Translation (773 aa):
MAECGASGSGSSGDSLDKSITLPPDEIFRNLENAKRFAIDIGGSLTKLAYYSTVQHKVAKVRSFDHSGKD
TEREHEPPYEISVQEEITARLHFIKFENTYIEACLDFIKDHLVNTETKVIQATGGGAYKFKDLIEEKLRL
KVDKEDVMTCLIKGCNFVLKNIPHEAFVYQKDSDPEFRFQTNHPHIFPYLLVNIGSGVSIVKVETEDRFE
WVGGSSIGGGTFWGLGALLTKTKKFDELLHLASRGQHSNVDMLVRDVYGGAHQTLGLSGNLIASSFGKSA
TADQEFSKEDMAKSLLHMISNDIGQLACLHARLHSLDRVYFGGFFIRGHPVTMRTITYSINFFSKGEVQA
LFLRHEGYLGAIGAFLKGAEQDNPNQYSWGENYAGSSGLMSASPELGPAQRARSGTFDLLEMDRLERPLV
DLPLLLDPPSYVPDTVDLTDDALARKYWLTCFEEALDGVVKRAVASQPDSVDAAERAEKFRQKYWNKLQT
LRQQPFAYGTLTVRSLLDTREHCLNEFNFPDPYSKVKQRENGVALRCFPGVVRSLDALGWEERQLALVKG
LLAGNVFDWGAKAVSAVLESDPYFGFEEAKRKLQERPWLVDSYSEWLQRLKGPPHKCALIFADNSGIDII
LGVFPFVRELLLRGTEVILACNSGPALNDVTHSESLIVAERIAGMDPVVHSALQEERLLLVQTGSSSPCL
DLSRLDKGLAALVRERGADLVVIEGMGRAVHTNYHAALRCESLKLAVIKNAWLAERLGGRLFSVIFKYEV
PAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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