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Report for CCDS9830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9830.1 Public Homo sapiens 14 VRTN 24 110 108 CCDS HistoryNCBI Gene:55237Re-query CCDS DB by CCDS ID:9830.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9830.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256362.5 ENSP00000256362.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000256362.5Link to Ensembl Protein Viewer:ENSP00000256362.4Re-query CCDS DB by Nucleotide ID:ENST00000256362Re-query CCDS DB by Protein ID:ENSP00000256362
Original member Current member NCBI NM_018228.3 NP_060698.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018228.3Link to Protein Sequence:NP_060698.2Re-query CCDS DB by Nucleotide ID:NM_018228Re-query CCDS DB by Protein ID:NP_060698Link to BLAST:NP_060698.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060698.2 702 Q9H8Y1 702 100% 0 0

Chromosomal Locations for CCDS 9830.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 74356784 74358892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2109 nt):
ATGACTTCTCGGAACCAGCTGGTGCAGAAGGTGCTGCAGGAGCTGCAGGAAGCAGTGGAGTGCGAAGGCC
TGGAGGGTCTCATAGGTGCTTCCTTGGAGGCCAAGCAGGTCCTGTCTTCCTTCACTCTCCCCACCTGCCG
GGAGGGAGGCCCTGGCCTCCAGGTGCTGGAAGTGGACTCGGTGGCCCTGAGCCTGTATCCAGAAGATGCT
CCACGGAACATGCTGCCGCTGGTGTGCAAGGGGGAGGGCAGCCTGCTGTTCGAGGCGGCCAGCATGCTGC
TGTGGGGTGACGCAGGCCTCAGCCTGGAGCTGCGGGCCCGCACCGTGGTAGAGATGCTGCTGCACAGACA
CTACTACCTCCAGGGCATGATCGACTCCAAAGTGATGCTGCAGGCCGTGCGCTACTCCCTATGCTCTGAG
GAGTCCCCTGAGATGACCAGCTTGCCCCCCGCCACGCTGGAGGCCATCTTCGATGCCGACGTCAAGGCCT
CCTGTTTCCCCAGCAGCTTCTCCAACGTGTGGCACTTGTATGCTCTCGCCTCTGTCCTCCAGCGGAACAT
CTACTCCATCTACCCCATGCGCAACCTCAAGATCCGGCCCTACTTCAACCGTGTCATCCGGCCCCGCCGC
TGCGACCACGTGCCCTCCACGCTGCACATCATGTGGGCTGGCCAGCCCCTCACCAGCCACTTCTTCCGCC
ACCAGTACTTTGCCCCTGTGGTGGGGCTGGAAGAGGTGGAGGCTGAAGGTGCCCCTGGCGTGGCCCCAGC
TCTTCCAGCCCTGGCCCCACTCTCATCGCCGGCCAAGACCCTGGAGCTGCTCAACCGTGAACCTGGCCTC
AGCTACTCTCACCTCTGTGAGCGCTACAGCGTCACCAAAAGCACCTTCTACCGCTGGCGGCGGCAGTCCC
AGGAGCACCGGCAGAAGGTTGCTGCCCGCTTCTCCGCCAAGCACTTCCTGCAGGACAGCTTCCACCGGGG
GGGCGTCGTGCCACTTCAGCAGTTCCTCCAGCGGTTCCCGGAGATCTCCCGCTCAACCTACTATGCCTGG
AAGCATGAGCTGCTGGGCTCTGGCACCTGCCCGGCCTTGCCCCCCAGGGAGGTGCTGGGCATGGAGGAGC
TAGAGAAGCTGCCGGAGGAGCAGGTGGCTGAGGAGGAGCTGGAGTGCTCCGCACTGGCGGTGTCAAGCCC
TGGAATGGTCTTAATGCAGCGGGCCAAGTTGTACCTGGAGCATTGCATCTCCCTGAACACACTGGTACCC
TATCGCTGCTTCAAACGCAGGTTCCCTGGCATCTCACGGTCCACTTATTATAATTGGCGGCGAAAGGCCC
TCCGGAGGAACCCCAGCTTCAAGCCGGCACCAGCCCTCTCTGCTGCTGGGACTCCCCAGCTAGCATCTGT
TGGGGAAGGGGCTGTAATTCCTTGGAAGAGTGAGGCGGAAGAGGGGGCAGGGAATGCCACAGGTGAGGAC
CCTCCCGCCCCCGGGGAGCTCCTGCCACTAAGGATGCCCCTGTCCCGTTGGCAGAGGCGTCTGCGCAGGG
CTGCCCGCAGGCAGGTGCTGAGTGGGCATCTCCCTTTCTGCCGCTTCCGCCTCCGCTACCCCAGCCTGTC
ACCTTCTGCCTTTTGGGTCTGGAAGAGTCTTGCTCGGGGTTGGCCCAGAGGCCTGTCCAAACTTCAGGTG
CCGGTCCCCACCTTGGGCAAAGGGGGGCAGGAGGCTGAGGAGAAGCAGGAGAAGGAGGCTGGCAGGGATG
TGACAGCTGTGATGGCCCCACCTGTGGGGGCTTCTTCAGAAGATGTAGAGGGAGGGCCTTCCAGAGAGGG
GGCCCTGCAGGAGGGGGCCACAGCCCAGGGCCAGCCCCACAGTGGGCCCTTGCTGAGCCAACCTGTGGTG
GCAGCAGCGGGTGGCAGGGATGGCCGGATGCTGGTGATGGACATGATCGCTACCACGAAGTTCAAGGCCC
AGGCCAAGCTGTTCTTGCAGAAGCGCTTCCAGTCCAAGAGCTTTCCCTCCTACAAGGAGTTCAGTGCCCT
CTTTCCCCTCACTGCCCGCTCCACATACTACATGTGGAAGCGAGCCCTCTATGACGGCCTGACCCTGGTA
GATGGCTGA

Translation (702 aa):
MTSRNQLVQKVLQELQEAVECEGLEGLIGASLEAKQVLSSFTLPTCREGGPGLQVLEVDSVALSLYPEDA
PRNMLPLVCKGEGSLLFEAASMLLWGDAGLSLELRARTVVEMLLHRHYYLQGMIDSKVMLQAVRYSLCSE
ESPEMTSLPPATLEAIFDADVKASCFPSSFSNVWHLYALASVLQRNIYSIYPMRNLKIRPYFNRVIRPRR
CDHVPSTLHIMWAGQPLTSHFFRHQYFAPVVGLEEVEAEGAPGVAPALPALAPLSSPAKTLELLNREPGL
SYSHLCERYSVTKSTFYRWRRQSQEHRQKVAARFSAKHFLQDSFHRGGVVPLQQFLQRFPEISRSTYYAW
KHELLGSGTCPALPPREVLGMEELEKLPEEQVAEEELECSALAVSSPGMVLMQRAKLYLEHCISLNTLVP
YRCFKRRFPGISRSTYYNWRRKALRRNPSFKPAPALSAAGTPQLASVGEGAVIPWKSEAEEGAGNATGED
PPAPGELLPLRMPLSRWQRRLRRAARRQVLSGHLPFCRFRLRYPSLSPSAFWVWKSLARGWPRGLSKLQV
PVPTLGKGGQEAEEKQEKEAGRDVTAVMAPPVGASSEDVEGGPSREGALQEGATAQGQPHSGPLLSQPVV
AAAGGRDGRMLVMDMIATTKFKAQAKLFLQKRFQSKSFPSYKEFSALFPLTARSTYYMWKRALYDGLTLV
DG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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