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Report for CCDS10669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10669.1 Public Homo sapiens 16 PPP4C 24 110 108 CCDS HistoryNCBI Gene:5531Re-query CCDS DB by CCDS ID:10669.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10669.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000279387.12 ENSP00000279387.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000279387.12Link to Ensembl Protein Viewer:ENSP00000279387.7Re-query CCDS DB by Nucleotide ID:ENST00000279387Re-query CCDS DB by Protein ID:ENSP00000279387
Original member Current member EBI ENST00000561610.1 ENSP00000455995.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561610.1Link to Ensembl Protein Viewer:ENSP00000455995.1Re-query CCDS DB by Nucleotide ID:ENST00000561610Re-query CCDS DB by Protein ID:ENSP00000455995
Original member Current member NCBI NM_001303503.2 NP_001290432.1 Accepted alive Link to Nucleotide Sequence:NM_001303503.2Link to Protein Sequence:NP_001290432.1Re-query CCDS DB by Nucleotide ID:NM_001303503Re-query CCDS DB by Protein ID:NP_001290432Link to BLAST:NP_001290432.1
Original member Current member NCBI NM_002720.3 NP_002711.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002720.3Link to Protein Sequence:NP_002711.1Re-query CCDS DB by Nucleotide ID:NM_002720Re-query CCDS DB by Protein ID:NP_002711Link to BLAST:NP_002711.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290432.1 307 P60510 307 100% 0 0
NP_002711.1 307 P60510 307 100% 0 0

Chromosomal Locations for CCDS 10669.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 30076378 30076475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30081259 30081310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30082484 30082534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30082746 30082847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30083394 30083567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30083655 30083781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30084666 30084855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 30084933 30085062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGCGGAGATCAGCGACCTGGACCGGCAGATCGAGCAGCTGCGTCGCTGCGAGCTCATCAAGGAGAGCG
AAGTCAAGGCCCTGTGCGCTAAGGCCAGAGAGATCTTGGTAGAGGAGAGCAACGTGCAGAGGGTGGACTC
GCCAGTCACAGTGTGCGGCGACATCCATGGACAATTCTATGACCTCAAAGAGCTGTTCAGAGTAGGTGGC
GACGTCCCTGAGACCAACTACCTCTTCATGGGGGACTTTGTGGACCGTGGCTTCTATAGCGTCGAAACGT
TCCTCCTGCTGCTGGCACTTAAGGTTCGCTATCCTGATCGCATCACACTGATCCGGGGCAACCATGAGAG
TCGCCAGATCACGCAGGTCTATGGCTTCTACGATGAGTGCCTGCGCAAGTACGGCTCGGTGACTGTGTGG
CGCTACTGCACTGAGATCTTTGACTACCTCAGCCTGTCAGCCATCATCGATGGCAAGATCTTCTGCGTGC
ACGGGGGCCTCTCCCCCTCCATCCAGACCCTGGATCAGATTCGGACAATCGACCGAAAGCAAGAGGTGCC
TCATGATGGGCCCATGTGTGACCTCCTCTGGTCTGACCCAGAAGACACCACAGGCTGGGGCGTGAGCCCC
CGAGGAGCCGGCTACCTATTTGGCAGTGACGTGGTGGCCCAGTTCAACGCAGCCAATGACATTGACATGA
TCTGCCGTGCCCACCAACTGGTGATGGAAGGTTACAAGTGGCACTTCAATGAGACGGTGCTCACTGTGTG
GTCGGCACCCAACTACTGCTACCGCTGTGGGAATGTGGCAGCCATCTTGGAGCTGGACGAGCATCTCCAG
AAAGATTTCATCATCTTTGAGGCTGCTCCCCAAGAGACACGGGGCATCCCCTCCAAGAAGCCCGTGGCCG
ACTACTTCCTGTGA

Translation (307 aa):
MAEISDLDRQIEQLRRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGG
DVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVTVW
RYCTEIFDYLSLSAIIDGKIFCVHGGLSPSIQTLDQIRTIDRKQEVPHDGPMCDLLWSDPEDTTGWGVSP
RGAGYLFGSDVVAQFNAANDIDMICRAHQLVMEGYKWHFNETVLTVWSAPNYCYRCGNVAAILELDEHLQ
KDFIIFEAAPQETRGIPSKKPVADYFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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