NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS35044.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35044.2 Public Homo sapiens 9 RFK 24 110 108 CCDS HistoryNCBI Gene:55312Re-query CCDS DB by CCDS ID:35044.2See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 35044.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the human reference genome sequence and by available conservation data. The reference genome contains a polymorphism that changes the previously represented ATG start codon to ATT; hence the next downstream AUG is represented in the update. This polymorphism is represented in the Reference SNP, rs2490582. The reference genome polymorphism results in a protein that is 7 aa shorter at the N-terminus, and is supported by homologous proteins. It is also possible that leaky scanning by ribosomes would permit translation initiation from the downstream AUG in alleles containing the upstream AUG.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35044.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376736.6 ENSP00000365926.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376736.6Link to Ensembl Protein Viewer:ENSP00000365926.1Re-query CCDS DB by Nucleotide ID:ENST00000376736Re-query CCDS DB by Protein ID:ENSP00000365926
Original member Current member NCBI NM_018339.6 NP_060809.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018339.6Link to Protein Sequence:NP_060809.3Re-query CCDS DB by Nucleotide ID:NM_018339Re-query CCDS DB by Protein ID:NP_060809Link to BLAST:NP_060809.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060809.3 155 Q969G6 155 100% 0 0

Chromosomal Locations for CCDS 35044.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 76387399 76387529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76388554 76388656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76392418 76392569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 76394090 76394171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGAGGCACCTGCCTTACTTCTGCCGGGGTCAAGTGGTGCGGGGCTTCGGCCGCGGCTCCAAGCAGCTGG
GCATCCCCACAGCTAATTTTCCTGAGCAAGTGGTAGATAATCTTCCAGCTGATATATCCACTGGTATTTA
CTATGGTTGGGCCAGTGTTGGAAGTGGAGATGTCCATAAGATGGTGGTGAGCATAGGATGGAACCCATAT
TACAAGAATACGAAGAAGTCTATGGAAACACATATCATGCATACCTTCAAAGAGGACTTCTATGGGGAAA
TCCTCAATGTGGCCATTGTTGGCTACCTGAGACCAGAAAAGAACTTTGATTCTTTAGAGTCACTTATTTC
AGCAATTCAAGGTGATATTGAAGAAGCTAAGAAACGACTAGAGTTACCAGAACATTTGAAAATCAAAGAA
GACAATTTCTTCCAGGTTTCTAAAAGCAAAATAATGAATGGCCACTGA

Translation (155 aa):
MRHLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVSIGWNPY
YKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEEAKKRLELPEHLKIKE
DNFFQVSKSKIMNGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH