NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9803.1 Public Homo sapiens 14 SYNJ2BP 24 110 108 CCDS HistoryNCBI Gene:55333Re-query CCDS DB by CCDS ID:9803.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9803.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256366.6 ENSP00000256366.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000256366.6Link to Ensembl Protein Viewer:ENSP00000256366.4Re-query CCDS DB by Nucleotide ID:ENST00000256366Re-query CCDS DB by Protein ID:ENSP00000256366
Original member Current member NCBI NM_018373.3 NP_060843.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018373.3Link to Protein Sequence:NP_060843.2Re-query CCDS DB by Nucleotide ID:NM_018373Re-query CCDS DB by Protein ID:NP_060843Link to BLAST:NP_060843.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060843.2 145 P57105 145 100% 0 0

Chromosomal Locations for CCDS 9803.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70372991 70373131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70375676 70375771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70388470 70388606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70416900 70416963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGAACGGAAGAGTGGATTATTTGGTCACTGAGGAAGAGATCAATCTTACCAGAGGGCCCTCAGGGCTGG
GCTTCAACATCGTCGGTGGGACAGATCAGCAGTATGTCTCCAACGACAGTGGCATCTACGTCAGCCGCAT
CAAAGAAAATGGGGCTGCGGCCCTGGATGGGCGGCTCCAGGAGGGTGATAAGATCCTTTCGGTAAATGGC
CAAGACCTAAAGAACCTGCTGCACCAGGATGCTGTAGACCTCTTTCGTAATGCAGGCTATGCTGTGTCTC
TGAGAGTGCAGCACAGGTTACAGGTGCAGAATGGACCTATAGGACATCGAGGTGAAGGGGACCCAAGTGG
TATTCCCATATTTATGGTGCTGGTGCCAGTGTTTGCCCTCACCATGGTAGCAGCCTGGGCTTTCATGAGA
TACCGGCAACAACTTTGA

Translation (145 aa):
MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNG
QDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPIGHRGEGDPSGIPIFMVLVPVFALTMVAAWAFMR
YRQQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH