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Report for CCDS80314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80314.1 Public Mus musculus 5 Csn1s1 23 108 98 CCDS HistoryNCBI Gene:12990Re-query CCDS DB by CCDS ID:80314.1Re-query CCDS DB by GeneID:12990See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197631.4 ENSMUSP00000142794.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197631.4Link to Ensembl Protein Viewer:ENSMUSP00000142794.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197631Re-query CCDS DB by Protein ID:ENSMUSP00000142794
Original member Current member NCBI NM_001286016.1 NP_001272945.1 Accepted alive Link to Nucleotide Sequence:NM_001286016.1Link to Protein Sequence:NP_001272945.1Re-query CCDS DB by Nucleotide ID:NM_001286016Re-query CCDS DB by Protein ID:NP_001272945Link to BLAST:NP_001272945.1

Chromosomal Locations for CCDS 80314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 87667247 87667297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87668294 87668326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87669007 87669033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87669514 87669552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87670895 87670918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87671003 87671041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87671525 87671548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87672187 87672210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87673252 87673281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87674055 87674087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87674197 87674241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87675013 87675054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87675483 87675500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87675611 87675628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87675727 87675744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87675855 87675872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87675980 87675997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87676114 87676131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87676237 87676254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87676363 87676380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87676487 87676504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87676604 87676621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87676739 87676756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87676868 87676885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87676993 87677010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87677120 87677137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87677599 87677640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87678042 87678083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87679023 87679049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87680052 87680075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87680877 87680962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 87681496 87681496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGAAACTCCTCATCCTCACCTGCCTCGTGGCTGCTGCTTTTGCTATGCCCAGACTTCATAGTAGAAATG
CAGTTAGCAGTCAAACTCAGCAACAGCATAGCAGCAGTGAGGAAATTTTTAAACAACCAAAGTATCTCAA
CCTAAATCAGGAATTCGTCAACAACATGAACAGACAGAGAGCACTTCTGACAGAACAGAACGATGAAATC
AAGGTAACTATGGATGCAGCATCTGAGGAACAAGCAATGGCAAGTGCTCAGGAAGACTCTTCAATCAGCT
CATCAAGTGAGGAATCTGAGGAAGCTATTCCCAATATCACTGAGCAGAAAAACATTGCAAATGAAGACAT
GCTCAACCAGTGCACCCTGGAACAGCTTCAGAGACAGTTTAAGTACAACCAACTTCTCCAGAAAGCTTCC
CTGGCTAAGCAAGCTTCCCTGTTTCAGCAACCTTCCCTGGTACAGCAAGCTTCCCTGTTTCAGCAACCTT
CCCTGCTTCAGCAAGCTTCCCTGTTTCAGCAACCTTCCATGGCTCAGCAAGCTTCCCTGCTACAGCAACT
TCTCCTGGCCCAGCAACCTTCCCTGGCACTGCAAGTTTCCCCAGCACAGCAATCTTCCCTGGTACAGCAA
GCTTTCCTGGCACAGCAAGCTTCCCTGGCACAGAAACATCATCCAAGACTGAGCCAGTCCTACTATCCAC
ATATGGAACAGCCTTACAGAATGAATGCATACAGCCAAGTTCAAATGAGACATCCTATGAGTGTAGTGGA
TCAGGCACTGGCCCAGTTCTCTGTTCAGGATATGCAGTACCTTACTCCCAAAGCTGTCCTTAACACCTTC
AAGCCCATTGTCTCCAAGGATACTGAAAAAACCAATGTGTGGTGA

Translation (294 aa):
MKLLILTCLVAAAFAMPRLHSRNAVSSQTQQQHSSSEEIFKQPKYLNLNQEFVNNMNRQRALLTEQNDEI
KVTMDAASEEQAMASAQEDSSISSSSEESEEAIPNITEQKNIANEDMLNQCTLEQLQRQFKYNQLLQKAS
LAKQASLFQQPSLVQQASLFQQPSLLQQASLFQQPSMAQQASLLQQLLLAQQPSLALQVSPAQQSSLVQQ
AFLAQQASLAQKHHPRLSQSYYPHMEQPYRMNAYSQVQMRHPMSVVDQALAQFSVQDMQYLTPKAVLNTF
KPIVSKDTEKTNVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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