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Report for CCDS39517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39517.1 Public Mus musculus 6 Tcf7l1 23 108 98 CCDS HistoryNCBI Gene:21415Re-query CCDS DB by CCDS ID:39517.1Re-query CCDS DB by GeneID:21415See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114053.8 ENSMUSP00000109687.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114053.8Link to Ensembl Protein Viewer:ENSMUSP00000109687.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114053Re-query CCDS DB by Protein ID:ENSMUSP00000109687
Original member Current member NCBI NM_001079822.2 NP_001073290.1 Accepted alive Link to Nucleotide Sequence:NM_001079822.2Link to Protein Sequence:NP_001073290.1Re-query CCDS DB by Nucleotide ID:NM_001079822Re-query CCDS DB by Protein ID:NP_001073290Link to BLAST:NP_001073290.1

Chromosomal Locations for CCDS 39517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72627360 72627793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72629956 72630031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72631012 72631119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72631215 72631374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72631956 72632096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72632927 72633010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72633216 72633318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72634100 72634232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72648801 72648842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72649120 72649203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72788211 72788338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72788562 72788625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72788710 72788952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGCCCCAGCTCGGTGGTGGCCGCGGTGGCGGCGCCGGCGGGGGAGGCGGTGGCTCCGGAGCCGGGGCAA
CCAGTGGAGGGGACGACCTCGGAGCGAACGACGAGCTGATCCCCTTCCAGGACGAGGGGGGCGAAGAGCA
AGAGCCGAGCAGCGACAGCGCTTCGGCGCAGAGGGATCTGGATGAGGTCAAGTCGTCCCTGGTCAACGAA
TCGGAGAATCAGAGCAGTAGCTCGGACTCCGAGGCGGAGAGGCGCCCGCAGCCCGCCCGGGACGCTTTCC
AGAAGCCGCGCGACTATTTCGCCGAAGTGAGAAGGCCCCAGGATGGCGCTTTTTTTAAGGGACCTGCGTA
TCCTGGGTACCCCTTCCTGATGATTCCAGACCTGAGCAGCCCGTACCTCTCCAACGGACCCCTGTCTCCT
GGTGGAGCGCGCACCTACCTACAGATGAAATGGCCCCTCCTCGATGTCCCCTCCAGTGCTACAGTCAAGG
ACACAAGGTCGCCATCTCCAGCACACTTGTATGGGGATCCTGCCCGTTGGATGGTGCCTCCCACATTCAG
GTCCAACAAAGTTCCTGTTGTTCAGCACCCTCATCACATGCACCCGCTGACACCTCTCATCACCTACAGC
AACGACCACTTCTCCCCTGCGTCCCCTCCCACGCATCTGTCCCCAGAGATCGACCCAAAGACAGGAATCC
CCCGGCCCCCTCATCCATCTGAGCTGTCACCGTATTACCCACTGTCTCCAGGAGCTGTCGGACAAATCCC
CCATCCCCTCGGCTGGCTCGTCCCACAGCAAGGGCAGCCCATGTACTCTCTCCCTCCGGGTGGTTTCCGG
CATCCTTACCCTGCCCTCGCCATGAACGCTTCAATGTCCAGCCTGGTCTCAAGCCGGTTCCCACACATGG
TGGCTCCTGCCCATCCTGGTCTGCCCACCTCAGGAATCCCCCACCCTGCCATCGTCTCCCCCATTGTGAA
GCAGGAGCCAGCAGCCCCCAGCCTGAGCCCTGCAGTGAGTGCGAAATCCCCAGTTACGGTGAAGAAGGAA
GAGGAGAAGAAACCTCACGTGAAAAAGCCCCTGAATGCCTTCATGTTGTATATGAAGGAGATGAGGGCCA
AGGTGGTGGCCGAGTGTACCCTGAAGGAAAGTGCAGCCATTAACCAAATCCTGGGAAGAAAGTGGCACAA
CCTGTCAAGAGAAGAACAGGCCAAATACTATGAGCTTGCCCGGAAAGAACGGCAGCTTCACGCGCAGCTC
TACCCAACCTGGTCAGCCCGGGACAACTATGGGAAGAAGAAGAAGAGGAAGAGAGAAAAGCAGCTGTCAC
AGACACAGTCTCAGCAGCAAATCCAAGAGGCAGAGGGTGCTCTGGCCTCTAAGAGCAAGAAGCCATGCAT
TCAGTACCTGCCCCCTGAGAAGCCTTGTGATAGCCCTGCGTCTTCCCATGGCAGCACGCTGGACTCCCCT
GCGACGCCCTCCGCAGCCTTGGCCTCACCAGCTGCCCCTGCGGCTACCCACTCCGAGCAAGCGCAGCCCC
TGTCGCTCACCACCAAACCGGAGGCCCGGGCCCAGCTGGCTCTCCACTCCGCTGCCTTCCTGTCGGCTAA
GGCGGCCGCCAGCAACTCCAGCCAGATGGGCAGCCAGCCCCCACTCCTATCCAGGCCCTTGCCCTTGGGC
TCTATGCCCGCCGCTCTGCTGACCTCTCCCCCTACTTTCCCAGCTACGCTCCATGCCCACCAGGCCCTCC
CCGTGCTACAGGCCCAGCCTCTTTCCTTGGTCACCAAGTCTGCCCACTAA

Translation (599 aa):
MPQLGGGRGGGAGGGGGGSGAGATSGGDDLGANDELIPFQDEGGEEQEPSSDSASAQRDLDEVKSSLVNE
SENQSSSSDSEAERRPQPARDAFQKPRDYFAEVRRPQDGAFFKGPAYPGYPFLMIPDLSSPYLSNGPLSP
GGARTYLQMKWPLLDVPSSATVKDTRSPSPAHLYGDPARWMVPPTFRSNKVPVVQHPHHMHPLTPLITYS
NDHFSPASPPTHLSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSLPPGGFR
HPYPALAMNASMSSLVSSRFPHMVAPAHPGLPTSGIPHPAIVSPIVKQEPAAPSLSPAVSAKSPVTVKKE
EEKKPHVKKPLNAFMLYMKEMRAKVVAECTLKESAAINQILGRKWHNLSREEQAKYYELARKERQLHAQL
YPTWSARDNYGKKKKRKREKQLSQTQSQQQIQEAEGALASKSKKPCIQYLPPEKPCDSPASSHGSTLDSP
ATPSAALASPAAPAATHSEQAQPLSLTTKPEARAQLALHSAAFLSAKAAASNSSQMGSQPPLLSRPLPLG
SMPAALLTSPPTFPATLHAHQALPVLQAQPLSLVTKSAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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