NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7296.1 Public Homo sapiens 10 MACROH2A2 24 110 108 CCDS HistoryNCBI Gene:55506Re-query CCDS DB by CCDS ID:7296.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7296.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373255.9 ENSP00000362352.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373255.9Link to Ensembl Protein Viewer:ENSP00000362352.3Re-query CCDS DB by Nucleotide ID:ENST00000373255Re-query CCDS DB by Protein ID:ENSP00000362352
Original member Current member EBI ENST00000679349.1 ENSP00000503835.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679349.1Link to Ensembl Protein Viewer:ENSP00000503835.1Re-query CCDS DB by Nucleotide ID:ENST00000679349Re-query CCDS DB by Protein ID:ENSP00000503835
Original member Current member NCBI NM_018649.3 NP_061119.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018649.3Link to Protein Sequence:NP_061119.1Re-query CCDS DB by Nucleotide ID:NM_018649Re-query CCDS DB by Protein ID:NP_061119Link to BLAST:NP_061119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061119.1 372 Q9P0M6 372 100% 0 0

Chromosomal Locations for CCDS 7296.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70075659 70075830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70090060 70090166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70091757 70091954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70093735 70093845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70095654 70095753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70100208 70100297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70109033 70109207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70111518 70111683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGTCGGGCCGGAGTGGGAAGAAGAAAATGTCCAAGCTGTCCCGTTCAGCTAGGGCAGGTGTCATCTTTC
CAGTGGGGAGGCTGATGCGTTATCTGAAGAAAGGGACGTTCAAGTACCGGATCAGCGTGGGCGCCCCTGT
CTACATGGCGGCAGTCATTGAGTACCTGGCAGCGGAAATTCTAGAATTGGCCGGCAATGCCGCGAGGGAC
AACAAGAAGGCCCGGATAGCCCCGAGACACATCTTGCTGGCAGTTGCCAATGACGAGGAGCTCAACCAGC
TGCTAAAAGGAGTGACCATCGCCAGTGGAGGCGTCCTGCCCAGAATTCACCCCGAACTGCTGGCCAAAAA
GCGAGGGACCAAAGGCAAGTCGGAAACGATCCTCTCCCCACCCCCAGAGAAAAGAGGCAGGAAGGCCACG
TCAGGCAAGAAGGGGGGGAAGAAATCCAAGGCTGCCAAACCACGGACGTCCAAAAAGTCCAAACCAAAGG
ACAGCGATAAAGAAGGAACTTCAAATTCCACCTCTGAAGATGGGCCAGGGGATGGATTCACCATTCTGTC
TTCTAAGAGCCTTGTTCTGGGACAGAAGCTGTCCTTAACCCAGAGTGACATCAGCCATATTGGCTCCATG
AGAGTGGAGGGCATTGTCCACCCAACCACAGCCGAAATTGACCTCAAAGAAGATATAGGTAAAGCCTTGG
AAAAGGCTGGGGGAAAAGAGTTCTTGGAAACGGTAAAGGAGCTTCGCAAATCCCAAGGCCCTTTGGAAGT
CGCCGAAGCCGCCGTCAGCCAATCCAGTGGACTCGCAGCCAAATTTGTCATCCACTGTCACATCCCTCAG
TGGGGCTCCGACAAATGTGAAGAACAGCTTGAAGAGACCATCAAAAACTGCCTGTCAGCGGCGGAGGACA
AGAAGCTAAAGTCCGTCGCGTTCCCGCCTTTCCCCAGCGGCAGAAACTGCTTTCCCAAACAGACTGCGGC
CCAGGTGACCCTCAAAGCCATCTCAGCCCACTTTGATGACTCGAGCGCGTCCTCGCTGAAGAACGTGTAC
TTCCTGCTCTTCGACAGCGAGAGCATCGGCATCTACGTGCAGGAGATGGCCAAGCTCGACGCCAAGTAG

Translation (372 aa):
MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEILELAGNAARD
NKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGTKGKSETILSPPPEKRGRKAT
SGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPGDGFTILSSKSLVLGQKLSLTQSDISHIGSM
RVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQ
WGSDKCEEQLEETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVY
FLLFDSESIGIYVQEMAKLDAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH