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Report for CCDS54805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54805.1 Public Homo sapiens 4 MAML3 24 110 108 CCDS HistoryNCBI Gene:55534Re-query CCDS DB by CCDS ID:54805.1See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 54805.1
The coding region was updated to make it identical to the current human reference genome sequence.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 54805.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509479.6 ENSP00000421180.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000509479.6Link to Ensembl Protein Viewer:ENSP00000421180.1Re-query CCDS DB by Nucleotide ID:ENST00000509479Re-query CCDS DB by Protein ID:ENSP00000421180
Original member Current member NCBI NM_018717.5 NP_061187.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018717.5Link to Protein Sequence:NP_061187.3Re-query CCDS DB by Nucleotide ID:NM_018717Re-query CCDS DB by Protein ID:NP_061187Link to BLAST:NP_061187.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061187.3 1138 Q96JK9 1138 100% 0 0

Chromosomal Locations for CCDS 54805.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 139719323 139720323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139725751 139725835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139730416 139730667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 139889357 139890967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140152860 140153327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3417 nt):
ATGGGGGATTTCGCAGCCCCCGCTGCTGCCGCGAATGGCAGTAGTATTTGCATCAACAGTAGCCTGAACA
GC
AGCCTCGGCGGGGCCGGGATCGGTGTGAATAATACTCCCAATAGTACTCCCGCTGCTCCGAGTAGCAA
T
CACCCGGCAGCCGGTGGATGCGGCGGCTCCGGGGGCCCCGGCGGCGGTTCGGCGGCCGTTCCCAAGCAC
AGC
ACCGTGGTGGAGCGGCTCCGCCAGCGCATCGAGGGCTGCCGTCGGCACCACGTCAACTGCGAGAACA
GG
TACCAGCAGGCTCAGGTGGAGCAGCTGGAGCTGGAGCGCCGGGACACCGTGAGCCTCTACCAGCGGAC
C
CTGGAGCAGAGGGCCAAGAAATCGGGCGCCGGCACCGGCAAACAGCAGCACCCGAGCAAACCCCAGCAA
GAT
GCGGAGGCTGCCTCGGCGGAGCAGAGGAACCACACGCTGATCATGCTACAAGAGACTGTGAAAAGGA
AG
TTGGAAGGAGCTCGATCACCACTTAATGGAGACCAGCAGAATGGTGCTTGTGATGGGAATTTTTCTCC
G
ACTAGCAAACGAATTCGAAAGGACATTTCTGCGGGGATGGAAGCCATCAACAATTTGCCCAGTAACATG
CCA
CTGCCTTCAGCTTCTCCTCTTCACCAACTTGACCTGAAACCTTCTTTGCCCTTGCAGAACAGTGGAA
CT
CACACTCCTGGGCTTCTAGAAGATCTAAGTAAGAATGGTAGGCTCCCTGAGATTAAACTTCCTGTCAA
C
GGTTGCAGTGACCTGGAGGATAGCTTCACCATCTTGCAGAGCAAAGACCTCAAACAAGAACCTCTCGAT
GAC
CCTACTTGCATAGACACATCAGAAACATCTCTTTCAAATCAGAACAAGCTGTTCTCAGACATTAATC
TG
AATGATCAGGAGTGGCAAGAATTAATAGATGAATTGGCCAACACGGTTCCTGAGGATGACATACAGGA
C
CTGTTCAACGAAGACTTTGAAGAGAAGAAGGAGCCAGAATTCTCGCAGCCAGCAACTGAGACCCCTCTC
TCC
CAGGAGAGTGCGAGCGTGAAGAGCGACCCCTCTCACTCTCCCTTCGCACATGTCTCCATGGGATCTC
CC
CAGGCGAGGCCTTCTTCTTCTGGTCCTCCCTTTTCTACTGTCTCCACGGCCACTAGTTTACCTTCTGT
T
GCCAGCACTCCCGCAGCTCCAAACCCTGCAAGCTCACCAGCAAACTGTGCTGTCCAGTCCCCTCAAACT
CCA
AACCAAGCCCACACTCCAGGCCAAGCTCCACCTCGGCCTGGAAATGGTTATCTCCTGAATCCGGCAG
CA
GTGACAGTGGCCGGTTCAGCGTCAGGGCCTGTGGCTGTGCCCAGCTCTGACATGTCTCCAGCAGAACA
G
CTCAAACAGATGGCTGCACAGCAGCAACAAAGGGCCAAACTCATGCAGCAGAAACAGCAACAGCAACAG
CAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCACTCAAATC
AG
ACTTCAAATTGGTCTCCCTTAGGACCTCCCTCTAGTCCATATGGAGCAGCTTTTACTGCAGAAAAACC
A
AATAGCCCAATGATGTACCCCCAAGCCTTTAACAACCAAAACCCTATAGTGCCTCCAATGGCAAACAAC
CTG
CAGAAGACAACAATGAATAACTACCTCCCTCAGAATCACATGAATATGATCAATCAGCAGCCAAATA
AC
TTGGGTACAAACTCCTTAAACAAACAGCACAATATTCTGACTTATGGCAACACTAAACCCCTGACCCA
C
TTCAATGCAGACCTGAGTCAGAGGATGACACCACCAGTGGCCAACCCCAACAAAAACCCCTTGATGCCG
TAT
ATCCAGCAGCAGCAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCCGCCACCTC
CA
CAGCTCCAGGCCCCCAGGGCACACCTGAGCGAAGACCAGAAACGCCTGCTTCTCATGAAGCAGAAAGG
A
GTGATGAATCAGCCCATGGCTTACGCTGCACTTCCATCCCACGGTCAGGAGCAGCATCCAGTTGGACTT
CCC
CGAACCACAGGCCCCATGCAGTCCTCCGTGCCCCCAGGCTCAGGTGGCATGGTCTCAGGAGCCAGTC
CC
GCAGGCCCCGGCTTCCTGGGCAGCCAGCCCCAAGCAGCCATCATGAAGCAGATGCTCATTGATCAGCG
G
GCCCAGTTGATAGAGCAGCAGAAGCAACAGTTCCTGCGGGAGCAAAGGCAGCAGCAGCAGCAGCAGCAG
CAG
CAGATTTTGGCGGAACAGCAGTTGCAGCAATCACATCTACCCCGGCAGCACCTCCAGCCACAGCGGA
AT
CCATACCCAGTGCAGCAGGTCAATCAGTTTCAAGGTTCTCCCCAGGATATAGCAGCCGTAAGAAGCCA
A
GCAGCCCTCCAGAGCATGCGAACGTCACGGCTGATGGCACAGAACGCAGGCATGATGGGAATAGGACCC
TCC
CAGAACCCTGGGACGATGGCCACCGCAGCTGCGCAGTCGGAGATGGGACTGGCCCCTTATAGCACCA
CG
CCTACCAGCCAACCAGGAATGTACAATATGAGCACAGGCATGACCCAAATGTTGCAGCATCCAAACCA
A
AGTGGCATGAGCATCACACATAACCAAGCCCAGGGACCGAGGCAACCTGCCTCTGGGCAGGGGGTTGGA
ATG
GTGAGTGGCTTTGGTCAGAGCATGCTGGTGAACTCAGCCATTACCCAGCAACATCCACAGATGAAAG
GG
CCAGTAGGCCAGGCCTTGCCTAGGCCCCAAGCCCCTCCAAGGCTGCAGAGCCTTATGGGAACAGTCCA
G
CAAGGAGCACAAAGCTGGCAACAGAGGAGCTTGCAGGGCATGCCTGGGAGGACTAGTGGAGAATTGGGA
CCA
TTCAACAATGGCGCCAGCTACCCTCTTCAAGCTGGGCAGCCGAGACTGACCAAGCAGCACTTCCCAC
AG
GGACTGAGCCAGTCAGTCGTGGATGCTAACACGGGCACAGTGAGGACCCTCAACCCAGCTGCCATGGG
T
CGGCAGATGATGCCATCGCTCCCGGGGCAGCAAGGCACCAGCCAGGCGAGGCCAATGGTCATGTCTGGC
CTG
AGCCAGGGAGTCCCAGGCATGCCAGCGTTCAGCCAGCCCCCAGCACAGCAGCAGATACCCAGTGGCA
GC
TTTGCTCCAAGCAGCCAGAGCCAAGCCTATGAGCGGAATGCCCCTCAGGACGTGTCATACAATTACAG
T
GGCGACGGAGCTGGGGGTTCCTTCCCTGGCCTCCCGGACGGTGCAGACCTTGTGGACTCCATCATCAAA
GGC
GGGCCAGGGGACGAGTGGATGCAGGAGCTTGATGAATTGTTTGGTAACCCCTAA


Translation (1138 aa):
MGDFAAPAAAANGSSICINSSLNSSLGGAGIGVNNTPNSTPAAPSSNHPAAGGCGGSGGPGGGSAAVPKH
S
TVVERLRQRIEGCRRHHVNCENRYQQAQVEQLELERRDTVSLYQRTLEQRAKKSGAGTGKQQHPSKPQQ
D
AEAASAEQRNHTLIM
LQETVKRKLEGARSPLNGDQQNGACDGNFSPTSKRIRKDISAGMEAINNLPSNM
P
LPSASPLHQLDLKPSLPLQNSGTHTPGLLEDLSKNGRLPEIKLPVNGCSDLEDSFTILQSKDLKQEPLD
D
PTCIDTSETSLSNQNKLFSDINLNDQEWQELIDELANTVPEDDIQDLFNEDFEEKKEPEFSQPATETPL
S
QESASVKSDPSHSPFAHVSMGSPQARPSSSGPPFSTVSTATSLPSVASTPAAPNPASSPANCAVQSPQT
P
NQAHTPGQAPPRPGNGYLLNPAAVTVAGSASGPVAVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQ
Q
QQQQQQQQQQQQQQQQQQQHSNQTSNWSPLGPPSSPYGAAFTAEKPNSPMMYPQAFNNQNPIVPPMANN
L
QKTTMNNYLPQNHMNMINQQPNNLGTNSLNKQHNILTYGNTKPLTHFNADLSQRMTPPVANPNKNPLMP
Y
IQQQQQQQQQQQQQQQQQQPPPPQLQAPRAHLSEDQKRLLLMKQKGVMNQPMAYAALPSHGQ
EQHPVGL
P
RTTGPMQSSVPPGSGGMVSGASPAGPGFLGSQPQAAIMKQMLIDQRAQLIEQQKQQFLREQRQQQQQQQ
Q
QILAEQ
QLQQSHLPRQHLQPQRNPYPVQQVNQFQGSPQDIAAVRSQAALQSMRTSRLMAQNAGMMGIGP
S
QNPGTMATAAAQSEMGLAPYSTTPTSQPGMYNMSTGMTQMLQHPNQSGMSITHNQAQGPRQPASGQGVG
M
VSGFGQSMLVNSAITQQHPQMKGPVGQALPRPQAPPRLQSLMGTVQQGAQSWQQRSLQGMPGRTSGELG
P
FNNGASYPLQAGQPRLTKQHFPQGLSQSVVDANTGTVRTLNPAAMGRQMMPSLPGQQGTSQARPMVMSG
L
SQGVPGMPAFSQPPAQQQIPSGSFAPSSQSQAYERNAPQDVSYNYSGDGAGGSFPGLPDGADLVDSIIK
G
GPGDEWMQELDELFGNP




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser