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Report for CCDS45981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45981.1 Public Homo sapiens 19 ZNF823 24 110 108 CCDS HistoryNCBI Gene:55552Re-query CCDS DB by CCDS ID:45981.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45981.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341191.11 ENSP00000340683.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341191.11Link to Ensembl Protein Viewer:ENSP00000340683.5Re-query CCDS DB by Nucleotide ID:ENST00000341191Re-query CCDS DB by Protein ID:ENSP00000340683
Original member Current member NCBI NM_001080493.4 NP_001073962.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080493.4Link to Protein Sequence:NP_001073962.1Re-query CCDS DB by Nucleotide ID:NM_001080493Re-query CCDS DB by Protein ID:NP_001073962Link to BLAST:NP_001073962.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073962.1 610 P16415-1 610 100% 0 0

Chromosomal Locations for CCDS 45981.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11721701 11723342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11724194 11724254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11725201 11725327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11738817 11738819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGGACTCAGTGGCCTTTGAAGATGTGGCTGTGAACTTCACACAAGAGGAGTGGGCTTTGCTGGGTCCAT
CACAGAAGAGTCTCTACAGAAATGTCATGCAGGAAACCATTAGGAACCTGGACTGTATAGAAATGAAATG
GGAGGACCAGAACATTGGAGATCAGTGCCAAAATGCCAAGAGAAATCTAAGAAGTCATACATGTGAAATT
AAAGATGACAGTCAATGTGGAGAAACTTTTGGCCAGATTCCAGATAGTATTGTGAACAAGAACACTCCTC
GAGTAAATCCATGTGACAGTGGTGAGTGTGGAGAAGTCGTCTTGGGTCATTCGTCTCTTAATTGCAACAT
CAGAGTTGACACTGGACACAAATCATGTGAGCATCAGGAATATGGAGAGAAGCCATATACACATAAACAA
CGTGGGAAAGCCATCAGTCATCAGCACTCCTTCCAGACACATGAAAGGCCCCCCACCGGAAAGAAACCCT
TCGATTGTAAAGAATGTGCAAAAACCTTTAGTTCTCTTGGAAACCTCCGAAGACACATGGCGGCACACCA
TGGAGATGGACCTTATAAATGTAAGTTGTGTGGGAAAGCCTTTGTTTGGCCCAGTTTATTTCATTTGCAC
GAAAGAACACACACTGGAGAGAAACCGTATGAATGTAAGCAGTGTTCTAAAGCCTTTCCTTTTTACAGTT
CCTATCTAAGACATGAAAGAATCCACACGGGAGAGAAAGCGTATGAATGTAAGCAGTGTTCCAAAGCCTT
TCCTGATTACAGTACCTATCTAAGACATGAGAGAACTCACACCGGAGAGAAACCCTATAAATGTACACAA
TGTGGGAAAGCCTTCAGCTGTTACTATTACACTCGACTACATGAAAGGACTCACACGGGAGAACAACCCT
ATGCATGTAAGCAATGTGGGAAAACGTTTTATCATCACACAAGCTTTCGAAGACACATGATAAGGCACAC
TGGAGACGGACCACATAAATGTAAGATATGTGGGAAAGGCTTTGATTGTCCTAGTTCAGTTCGAAATCAT
GAAACTACTCACACTGGAGAGAAACCCTATGAATGTAAGCAGTGTGGGAAAGTGTTATCTCATAGCTCGA
GCTTTCGAAGTCACATGATAACACACACAGGAGATGGACCCCAGAAATGCAAGATATGTGGGAAAGCCTT
TGGTTGTCCCAGTTTATTTCAAAGACATGAAAGGACTCACACTGGAGAGAAACCCTATCAATGTAAACAA
TGTGGTAAAGCCTTCAGTCTTGCCGGTTCCCTTCGAAGACATGAAGCAACTCACACTGGAGTGAAACCCT
ATAAATGTCAGTGTGGGAAAGCCTTTAGTGATCTCTCTTCCTTTCAAAATCATGAGACAACTCACACTGG
AGAGAAGCCATATGAGTGTAAGGAATGTGGGAAAGCATTCAGTTGTTTCAAATACCTTTCTCAACATAAA
AGGACCCACACAGTAGAAAAACCTTATGAGTGTAAAACATGTAGAAAAGCCTTCAGTCATTTCAGTAACT
TAAAAGTCCATGAAAGGATTCACTCTGGAGAGAAGCCATATGAATGTAAGGAATGTGGAAAAGCATTCTC
TTGGCTCACTTGCCTTCTACGACATGAAAGAATTCACACTGGAGAGAAACCCTATGAATGTCTACAATGT
GGTAAAGCCTTCACTCGTTCCCGTTTCCTTCGAGGACATGAAAAAACTCACACTGGAGAGAAGCTGTATG
AATGTAAGGAATGTGGGAAAGCATTGAGTTCTCTCCGTTCCTTGCATAGACATAAAAGGACTCACTGGAA
AGATACTCTCTAA

Translation (610 aa):
MDSVAFEDVAVNFTQEEWALLGPSQKSLYRNVMQETIRNLDCIEMKWEDQNIGDQCQNAKRNLRSHTCEI
KDDSQCGETFGQIPDSIVNKNTPRVNPCDSGECGEVVLGHSSLNCNIRVDTGHKSCEHQEYGEKPYTHKQ
RGKAISHQHSFQTHERPPTGKKPFDCKECAKTFSSLGNLRRHMAAHHGDGPYKCKLCGKAFVWPSLFHLH
ERTHTGEKPYECKQCSKAFPFYSSYLRHERIHTGEKAYECKQCSKAFPDYSTYLRHERTHTGEKPYKCTQ
CGKAFSCYYYTRLHERTHTGEQPYACKQCGKTFYHHTSFRRHMIRHTGDGPHKCKICGKGFDCPSSVRNH
ETTHTGEKPYECKQCGKVLSHSSSFRSHMITHTGDGPQKCKICGKAFGCPSLFQRHERTHTGEKPYQCKQ
CGKAFSLAGSLRRHEATHTGVKPYKCQCGKAFSDLSSFQNHETTHTGEKPYECKECGKAFSCFKYLSQHK
RTHTVEKPYECKTCRKAFSHFSNLKVHERIHSGEKPYECKECGKAFSWLTCLLRHERIHTGEKPYECLQC
GKAFTRSRFLRGHEKTHTGEKLYECKECGKALSSLRSLHRHKRTHWKDTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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