NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9512.1 Public Homo sapiens 13 RAB20 24 110 108 CCDS HistoryNCBI Gene:55647Re-query CCDS DB by CCDS ID:9512.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9512.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000267328.5 ENSP00000267328.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000267328.5Link to Ensembl Protein Viewer:ENSP00000267328.3Re-query CCDS DB by Nucleotide ID:ENST00000267328Re-query CCDS DB by Protein ID:ENSP00000267328
Original member Current member NCBI NM_017817.3 NP_060287.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017817.3Link to Protein Sequence:NP_060287.1Re-query CCDS DB by Nucleotide ID:NM_017817Re-query CCDS DB by Protein ID:NP_060287Link to BLAST:NP_060287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060287.1 234 Q9NX57 234 100% 0 0

Chromosomal Locations for CCDS 9512.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 110523665 110524197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 110561348 110561519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGAGGAAGCCCGACAGCAAGATCGTGCTCCTGGGGGACATGAACGTGGGGAAGACGTCGCTGCTGCAGC
GGTATATGGAGCGGCGCTTCCCGGACACGGTCAGCACGGTGGGCGGCGCCTTCTACCTGAAGCAGTGGCG
CTCCTACAACATCTCCATCTGGGACACCGCAGGGCGGGAGCAGTTCCACGGCCTGGGCTCCATGTACTGC
CGGGGGGCGGCCGCCATCATCCTCACCTATGATGTGAATCACCGGCAGAGCCTGGTGGAGCTGGAGGACC
GGTTCCTGGGCCTGACAGACACAGCCAGCAAAGACTGCCTCTTTGCCATCGTGGGGAACAAAGTGGACCT
CACTGAGGAGGGGGCCTTGGCGGGCCAGGAGAAGGAAGAGTGCAGTCCCAATATGGACGCTGGGGACCGT
GTCTCCCCAAGGGCACCTAAGCAGGTGCAGCTGGAGGATGCGGTGGCCCTTTATAAAAAGATCCTCAAGT
ACAAGATGCTGGATGAGCAGGATGTGCCGGCCGCTGAGCAAATGTGCTTTGAGACCAGCGCCAAGACCGG
CTACAATGTGGACCTCCTGTTTGAGACCCTCTTTGACCTGGTGGTGCCAATGATCTTACAGCAGAGAGCT
GAGAGGCCGTCACACACAGTGGATATATCCAGTCATAAGCCACCCAAGAGGACCAGATCTGGGTGTTGTG
CCTGA

Translation (234 aa):
MRKPDSKIVLLGDMNVGKTSLLQRYMERRFPDTVSTVGGAFYLKQWRSYNISIWDTAGREQFHGLGSMYC
RGAAAIILTYDVNHRQSLVELEDRFLGLTDTASKDCLFAIVGNKVDLTEEGALAGQEKEECSPNMDAGDR
VSPRAPKQVQLEDAVALYKKILKYKMLDEQDVPAAEQMCFETSAKTGYNVDLLFETLFDLVVPMILQQRA
ERPSHTVDISSHKPPKRTRSGCCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH