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Report for CCDS6454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6454.1 Public Homo sapiens 9 CDC37L1 24 110 108 CCDS HistoryNCBI Gene:55664Re-query CCDS DB by CCDS ID:6454.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6454.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381854.4 ENSP00000371278.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381854.4Link to Ensembl Protein Viewer:ENSP00000371278.3Re-query CCDS DB by Nucleotide ID:ENST00000381854Re-query CCDS DB by Protein ID:ENSP00000371278
Original member Current member NCBI NM_017913.4 NP_060383.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017913.4Link to Protein Sequence:NP_060383.2Re-query CCDS DB by Nucleotide ID:NM_017913Re-query CCDS DB by Protein ID:NP_060383Link to BLAST:NP_060383.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060383.2 337 Q7L3B6 337 100% 0 0

Chromosomal Locations for CCDS 6454.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 4679768 4679899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4684877 4685158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4688513 4688606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4697096 4697211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4697757 4697879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4701864 4702028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 4706011 4706112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1014 nt):
ATGGAACAACCGTGGCCGCCTCCGGGACCCTGGAGCCTCCCTCGGGCCGAGGGTGAGGCTGAGGAAGAGA
GTGACTTCGACGTGTTCCCCAGTTCTCCCCGCTGCCCGCAGCTGCCAGGCGGCGGCGCCCAGATGTATAG
CCATGGAATTGAATTGGCTTGCCAAAAGCAGAAAGAGTTTGTGAAGAGCTCTGTGGCGTGCAAATGGAAT
CTTGCTGAAGCTCAACAGAAACTTGGTAGCTTAGCACTGCATAATTCTGAGTCCTTGGATCAGGAGCATG
CCAAAGCACAAACAGCAGTATCAGAACTGAGGCAACGGGAAGAAGAGTGGCGACAGAAAGAAGAAGCTCT
AGTACAAAGAGAGAAGATGTGTCTGTGGAGCACGGATGCCATTAGCAAGGATGTTTTTAATAAGAGTTTT
ATTAATCAAGATAAAAGAAAAGACACAGAAGATGAAGATAAATCAGAATCATTTATGCAAAAATATGAGC
AAAAAATCAGACATTTTGGTATGTTGAGTCGATGGGATGATAGCCAGAGATTTTTGTCTGACCATCCATA
CCTTGTATGTGAAGAAACTGCTAAATATCTTATTTTATGGTGTTTTCACCTGGAAGCTGAGAAGAAAGGG
GCTTTAATGGAACAAATAGCACATCAAGCTGTTGTAATGCAGTTTATTATGGAAATGGCCAAAAACTGTA
ATGTGGATCCAAGAGGGTGTTTTCGTTTATTTTTCCAGAAAGCCAAAGCAGAGGAAGAAGGTTATTTTGA
AGCATTCAAAAATGAACTTGAAGCTTTCAAGTCAAGAGTAAGACTTTATTCTCAATCACAAAGTTTTCAA
CCTATGACAGTTCAGAATCATGTTCCCCATTCTGGTGTTGGATCTATAGGTTTATTAGAATCCTTACCAC
AGAATCCAGATTATCTTCAGTATTCTATCAGTACAGCTCTCTGCAGCTTAAACTCGGTGGTACATAAAGA
AGATGATGAACCCAAAATGATGGACACTGTATAA

Translation (337 aa):
MEQPWPPPGPWSLPRAEGEAEEESDFDVFPSSPRCPQLPGGGAQMYSHGIELACQKQKEFVKSSVACKWN
LAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQREKMCLWSTDAISKDVFNKSF
INQDKRKDTEDEDKSESFMQKYEQKIRHFGMLSRWDDSQRFLSDHPYLVCEETAKYLILWCFHLEAEKKG
ALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYSQSQSFQ
PMTVQNHVPHSGVGSIGLLESLPQNPDYLQYSISTALCSLNSVVHKEDDEPKMMDTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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