NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS66730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
66730.1 Public Homo sapiens 15 ARHGAP11A 24 110 108 CCDS HistoryNCBI Gene:9824Re-query CCDS DB by CCDS ID:66730.1Re-query CCDS DB by GeneID:9824See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 66730.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543522.5 ENSP00000440073.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543522.5Link to Ensembl Protein Viewer:ENSP00000440073.1Re-query CCDS DB by Nucleotide ID:ENST00000543522Re-query CCDS DB by Protein ID:ENSP00000440073
Original member Current member EBI ENST00000565905.5 ENSP00000455754.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000565905.5Link to Ensembl Protein Viewer:ENSP00000455754.1Re-query CCDS DB by Nucleotide ID:ENST00000565905Re-query CCDS DB by Protein ID:ENSP00000455754
Original member Current member NCBI NM_001286479.3 NP_001273408.1 Accepted alive Link to Nucleotide Sequence:NM_001286479.3Link to Protein Sequence:NP_001273408.1Re-query CCDS DB by Nucleotide ID:NM_001286479Re-query CCDS DB by Protein ID:NP_001273408Link to BLAST:NP_001273408.1
Original member Current member NCBI NM_001286480.3 NP_001273409.1 Accepted alive Link to Nucleotide Sequence:NM_001286480.3Link to Protein Sequence:NP_001273409.1Re-query CCDS DB by Nucleotide ID:NM_001286480Re-query CCDS DB by Protein ID:NP_001273409Link to BLAST:NP_001273409.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273408.1 834 Q6P4F7-3 834 100% 0 0
NP_001273409.1 834 Q6P4F7-3 834 100% 0 0

Chromosomal Locations for CCDS 66730.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 32625096 32625243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32625487 32625633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32628728 32628802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32629595 32629762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32632979 32633108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32633933 32634041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32635777 32635915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 32636257 32637845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGGACAGCAGCAATCTTGCAGTAATATTTGCACCGAATCTTCTTCAGACAAGTGAAGGACATGAAAAGA
TGTCTTCTAACACAGAAAAGAAGCTACGATTACAGGCTGCAGTAGTACAGACTCTTATCGATTATGCATC
AGATATTGGGCGTGTACCAGATTTTATCCTGGAAAAGATACCAGCCATGTTGGGTATTGATGGTCTCTGT
GCTACTCCATCACTGGAAGGCTTTGAAGAAGGTGAATATGAAACTCCTGGTGAATATAAGAGAAAGAGAA
GACAAAGTGTAGGAGATTTTGTTAGTGGAGCACTAAATAAATTTAAACCTAACAGAACACCTTCTATTAC
ACCTCAAGAAGAAAGAATTGCCCAGCTATCTGAATCACCAGTGATTCTTACACCAAATGCTAAGCGTACA
TTGCCAGTAGATTCTTCTCATGGTTTCTCAAGTAAGAAAAGGAAGTCCATCAAGCACAATTTTAACTTTG
AGCTGTTGCCAAGTAATCTCTTCAATAGCAGTTCTACACCGGTATCAGTTCACATCGATACAAGCTCAGA
AGGGTCATCTCAGAGTTCACTCTCTCCTGTACTCATTGGTGGAAACCATTTGATCACTGCAGGTGTGCCA
AGGCGAAGTAAAAGAATTGCAGGCAAAAAAGTTTGCAGAGTGGAATCAGGAAAAGCAGGCTGCTTTTCTC
CTAAAATCAGCCATAAAGAAAAGGTTCGAAGATCTCTGCGTTTGAAATTCAATCTAGGGAAAAATGGCAG
AGAAGTAAATGGATGTTCTGGTGTCAATAGATATGAAAGTGTTGGTTGGCGACTTGCAAATCAACAAAGT
TTAAAAAATCGAATTGAATCTGTAAAAACAGGTTTGCTTTTTAGCCCAGATGTTGATGAAAAGTTACCAA
AGAAAGGTTCAGAAAAGATCAGTAAGTCTGAGGAAACCTTACTAACTCCAGAGCGACTAGTTGGAACAAA
TTACCGGATGTCTTGGACAGGACCTAATAATTCAAGTTTTCAAGAAGTAGATGCAAATGAAGCTTCTTCA
ATGGTGGAAAATCTTGAGGTAGAAAACTCTTTGGAGCCTGATATTATGGTAGAAAAGTCACCTGCTACTT
CATGTGAACTCACCCCTTCCAATTTAAACAATAAGCATAATAGCAACATAACAAGTAGCCCTCTTAGCGG
GGATGAAAATAACATGACCAAAGAGACTTTGGTGAAAGTTCAAAAAGCGTTTTCTGAATCTGGAAGTAAT
CTTCACGCATTGATGAATCAGAGGCAGTCATCAGTAACTAATGTGGGGAAAGTAAAATTAACTGAACCAT
CTTATTTAGAAGATAGCCCAGAGGAAAATCTATTTGAAACTAATGATTTGACTATAGTAGAATCAAAGGA
GAAATATGAACACCACACTGGTAAAGGTGAAAAATGTTTTTCAGAGAGGGACTTTTCACCCCTTCAAACT
CAAACATTTAATAGAGAAACAACTATAAAATGTTATTCAACTCAGATGAAGATGGAACATGAAAAAGACA
TTCATTCAAATATGCCAAAAGATTATTTAAGCAAGCAAGAATTCTCCAGTGATGAAGAAATAAAGAAACA
GCAGTCCCCAAAGGATAAACTAAATAATAAATTAAAAGAGAATGAGAATATGATGGAAGGTAACTTACCG
AAGTGTGCAGCACATAGCAAGGACGAGGCTAGATCCTCTTTCTCACAGCAGAGTACATGTGTTGTAACAA
ACTTGTCAAAACCTAGGCCTATGAGAATTGCTAAACAGCAGTCATTGGAAACATGTGAGAAAACAGTTTC
TGAAAGTTCACAAATGACAGAACATAGAAAGGTTTCTGATCACATACAGTGGTTTAACAAGCTTTCTTTA
AATGAACCAAATAGAATAAAAGTCAAGTCACCTCTTAAGTTTCAGCGTACTCCTGTTCGTCAGTCCGTCA
GAAGAATTAATTCTTTGTTGGAGTATAGCAGACAACCTACAGGGCATAAGTTGGCGAGTCTTGGTGATAC
AGCTTCTCCTTTGGTCAAATCAGTGAGCTGTGACGGTGCTCTTTCCTCTTGTATAGAAAGTGCATCAAAA
GATTCCTCTGTTTCATGTATCAAATCAGGTCCTAAAGAACAGAAGTCCATGTCATGTGAAGAGTCAAATA
TTGGTGCAATTTCAAAGTCAAGCATGGAGTTACCCTCGAAATCTTTCTTAAAGATGAGGAAGCACCCAGA
TTCAGTGAATGCTTCTCTTAGGTCTACTACAGTTTATAAACAGAAGATCTTATCTGATGGCCAAGTTAAG
GTTCCCTTGGATGATCTGACTAATCATGATATAGTAAAACCAGTTGTAAATAACAACATGGGCATTTCTT
CTGGGATAAATAACAGGGTCCTTAGGAGACCATCAGAAAGAGGAAGGGCCTGGTACAAAGGTTCTCCAAA
ACATCCTATCGGAAAAACTCAATTACTACCAACAAGTAAACCTGTAGATTTGTAA

Translation (834 aa):
MDSSNLAVIFAPNLLQTSEGHEKMSSNTEKKLRLQAAVVQTLIDYASDIGRVPDFILEKIPAMLGIDGLC
ATPSLEGFEEGEYETPGEYKRKRRQSVGDFVSGALNKFKPNRTPSITPQEERIAQLSESPVILTPNAKRT
LPVDSSHGFSSKKRKSIKHNFNFELLPSNLFNSSSTPVSVHIDTSSEGSSQSSLSPVLIGGNHLITAGVP
RRSKRIAGKKVCRVESGKAGCFSPKISHKEKVRRSLRLKFNLGKNGREVNGCSGVNRYESVGWRLANQQS
LKNRIESVKTGLLFSPDVDEKLPKKGSEKISKSEETLLTPERLVGTNYRMSWTGPNNSSFQEVDANEASS
MVENLEVENSLEPDIMVEKSPATSCELTPSNLNNKHNSNITSSPLSGDENNMTKETLVKVQKAFSESGSN
LHALMNQRQSSVTNVGKVKLTEPSYLEDSPEENLFETNDLTIVESKEKYEHHTGKGEKCFSERDFSPLQT
QTFNRETTIKCYSTQMKMEHEKDIHSNMPKDYLSKQEFSSDEEIKKQQSPKDKLNNKLKENENMMEGNLP
KCAAHSKDEARSSFSQQSTCVVTNLSKPRPMRIAKQQSLETCEKTVSESSQMTEHRKVSDHIQWFNKLSL
NEPNRIKVKSPLKFQRTPVRQSVRRINSLLEYSRQPTGHKLASLGDTASPLVKSVSCDGALSSCIESASK
DSSVSCIKSGPKEQKSMSCEESNIGAISKSSMELPSKSFLKMRKHPDSVNASLRSTTVYKQKILSDGQVK
VPLDDLTNHDIVKPVVNNNMGISSGINNRVLRRPSERGRAWYKGSPKHPIGKTQLLPTSKPVDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH