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Report for CCDS14510.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14510.2 Public Homo sapiens X TCEAL4 24 110 108 CCDS HistoryNCBI Gene:79921Re-query CCDS DB by CCDS ID:14510.2Re-query CCDS DB by GeneID:79921See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 14510.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415568.2 ENSP00000415564.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415568.2Link to Ensembl Protein Viewer:ENSP00000415564.2Re-query CCDS DB by Nucleotide ID:ENST00000415568Re-query CCDS DB by Protein ID:ENSP00000415564
Original member Current member EBI ENST00000472484.6 ENSP00000421156.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000472484.6Link to Ensembl Protein Viewer:ENSP00000421156.1Re-query CCDS DB by Nucleotide ID:ENST00000472484Re-query CCDS DB by Protein ID:ENSP00000421156
Original member Current member EBI ENST00000468024.5 ENSP00000421857.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000468024.5Link to Ensembl Protein Viewer:ENSP00000421857.1Re-query CCDS DB by Nucleotide ID:ENST00000468024Re-query CCDS DB by Protein ID:ENSP00000421857
Original member Current member EBI ENST00000472745.1 ENSP00000424314.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000472745.1Link to Ensembl Protein Viewer:ENSP00000424314.1Re-query CCDS DB by Nucleotide ID:ENST00000472745Re-query CCDS DB by Protein ID:ENSP00000424314
Original member Current member EBI ENST00000494801.5 ENSP00000427494.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000494801.5Link to Ensembl Protein Viewer:ENSP00000427494.1Re-query CCDS DB by Nucleotide ID:ENST00000494801Re-query CCDS DB by Protein ID:ENSP00000427494
Original member Current member NCBI NM_001006935.3 NP_001006936.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001006935.3Link to Protein Sequence:NP_001006936.1Re-query CCDS DB by Nucleotide ID:NM_001006935Re-query CCDS DB by Protein ID:NP_001006936Link to BLAST:NP_001006936.1
Original member Current member NCBI NM_001006937.3 NP_001006938.1 Accepted alive Link to Nucleotide Sequence:NM_001006937.3Link to Protein Sequence:NP_001006938.1Re-query CCDS DB by Nucleotide ID:NM_001006937Re-query CCDS DB by Protein ID:NP_001006938Link to BLAST:NP_001006938.1
Original member Current member NCBI NM_001305840.2 NP_001292769.1 Accepted alive Link to Nucleotide Sequence:NM_001305840.2Link to Protein Sequence:NP_001292769.1Re-query CCDS DB by Nucleotide ID:NM_001305840Re-query CCDS DB by Protein ID:NP_001292769Link to BLAST:NP_001292769.1
Original member Current member NCBI NM_001305841.2 NP_001292770.1 Accepted alive Link to Nucleotide Sequence:NM_001305841.2Link to Protein Sequence:NP_001292770.1Re-query CCDS DB by Nucleotide ID:NM_001305841Re-query CCDS DB by Protein ID:NP_001292770Link to BLAST:NP_001292770.1
Original member Current member NCBI NM_001305842.2 NP_001292771.1 Accepted alive Link to Nucleotide Sequence:NM_001305842.2Link to Protein Sequence:NP_001292771.1Re-query CCDS DB by Nucleotide ID:NM_001305842Re-query CCDS DB by Protein ID:NP_001292771Link to BLAST:NP_001292771.1
Original member Current member NCBI NM_024863.6 NP_079139.4 Accepted alive Link to Nucleotide Sequence:NM_024863.6Link to Protein Sequence:NP_079139.4Re-query CCDS DB by Nucleotide ID:NM_024863Re-query CCDS DB by Protein ID:NP_079139Link to BLAST:NP_079139.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006936.1 215 Q96EI5-1 215 100% 0 0
NP_001006938.1 215 Q96EI5-1 215 100% 0 0
NP_001292769.1 215 Q96EI5-1 215 100% 0 0
NP_001292770.1 215 Q96EI5-1 215 100% 0 0
NP_001292771.1 215 Q96EI5-1 215 100% 0 0
NP_079139.4 215 Q96EI5-1 215 100% 0 0

Chromosomal Locations for CCDS 14510.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 103586676 103587323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGAAAAACTCTACAGTGAAAATGAAGGAATGGCTTCAAACCAAGGAAAGATGGAAAATGAAGAACAGC
CACAAGACGAGAGAAAGCCAGAAGTAACTTGTACTCTGGAAGACAAGAAGTTAGAAAACGAGGGAAAGAC
AGAAAACAAGGGCAAAACAGGAGATGAGGAAATGTTAAAGGATAAAGGAAAGCCAGAGAGTGAGGGAGAG
GCAAAAGAAGGAAAGTCAGAGAGGGAGGGAGAGTCAGAGATGGAGGGAGGATCAGAGAGAGAGGGAAAAC
CAGAGATAGAGGGAAAGCCAGAGAGTGAAGGAGAGCCAGGGAGTGAAACAAGGGCTGCAGGAAAGCGCCC
AGCTGAGGATGATGTACCCAGGAAAGCCAAAAGAAAAACTAATAAGGGGCTGGCTCATTACCTCAAGGAG
TATAAAGAGGCCATACATGATATGAATTTCAGCAATGAGGACATGATAAGAGAATTTGACAATATGGCTA
AGGTGCAGGATGAGAAGAGAAAAAGCAAACAGAAATTGGGGGCGTTTTTGTGGATGCAAAGAAATTTACA
GGACCCCTTCTACCCTAGAGGTCCAAGGGAATTCAGGGGTGGCTGCAGGGCCCCACGAAGGGACATTGAA
GACATTCCTTATGTGTAG

Translation (215 aa):
MEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPESEGE
AKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHYLKE
YKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRRDIE
DIPYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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