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Report for CCDS35236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35236.1 Public Homo sapiens X ZNF182 24 110 108 CCDS HistoryNCBI Gene:7569Re-query CCDS DB by CCDS ID:35236.1Re-query CCDS DB by GeneID:7569See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35236.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396965.5 ENSP00000380165.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396965.5Link to Ensembl Protein Viewer:ENSP00000380165.1Re-query CCDS DB by Nucleotide ID:ENST00000396965Re-query CCDS DB by Protein ID:ENSP00000380165
Original member Current member NCBI NM_001178099.2 NP_001171570.1 Accepted alive Link to Nucleotide Sequence:NM_001178099.2Link to Protein Sequence:NP_001171570.1Re-query CCDS DB by Nucleotide ID:NM_001178099Re-query CCDS DB by Protein ID:NP_001171570Link to BLAST:NP_001171570.1
Original member Current member NCBI NM_006962.2 NP_008893.1 Accepted alive Link to Nucleotide Sequence:NM_006962.2Link to Protein Sequence:NP_008893.1Re-query CCDS DB by Nucleotide ID:NM_006962Re-query CCDS DB by Protein ID:NP_008893Link to BLAST:NP_008893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171570.1 639 P17025-1 639 100% 0 0
NP_008893.1 639 P17025-1 639 100% 0 0

Chromosomal Locations for CCDS 35236.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 47976167 47977797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47982949 47983038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47983285 47983411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 47988524 47988595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGACACCAGCATCTGCATCTGGTGAGGACTCAGGAAGCTTCTACTCATGGCAGAAGGCAAAGAGGGAAC
AGGGGCTAGTGACATTTGAAGATGTAGCTGTGGATTTCACCCAGGAGGAGTGGCAGTACCTGAACCCACC
ACAGAGGACCCTGTACAGAGACGTGATGCTGGAGACCTACAGCAACTTGGTCTTTGTGGGGCAGCAGGTT
ACCAAACCAAACCTCATCCTCAAGTTGGAGGTAGAAGAATGCCCGGCAGAAGGAAAAATCCCATTTTGGA
ACTTTCCAGAAGTCTGTCAAGTTGATGAACAGATTGAGAGGCAACATCAGGATGACCAAGATAAATGTCT
GCTGATGCAAGTTGGATTTTCTGACAAGAAAACAATTATCACCAAGAGTGCTCGTGACTGTCATGAGTTT
GGAAACATACTTCATCTGAGTACAAACCTTGTTGCTTCAATACAAAGACCCGATAAACACGAATCATTTG
GAAATAATATGGTAGATAATTTAGACTTATTTAGTAGAAGTTCTGCAGAAAATAAATATGATAATGGATG
TGCAAAATTGTTCTTCCATACTGAGTATGAGAAAACAAATCCTGGAATGAAGCCCTATGGCTATAAAGAG
TGTGGGAAAGGTCTTAGGCGAAAGAAAGGCCTTAGTCTACATCAGAGAATTAAAAATGGAGAGAAACCCT
TTGAATGTACTGCATGTAGGAAAACCTTCAGCAAGAAGTCACACCTCATTGTACATTGGAGAACTCATAC
GGGAGAGAAACCTTTTGGATGTACCGAATGTGGAAAAGCTTTTAGCCAAAAATCTCAGCTCATTATACAC
TTGCGAACTCATACAGGAGAGAGACCCTTTGAGTGTCCTGAATGTGGAAAAGCCTTCAGAGAAAAGTCAA
CTGTCATCATACATTACAGGACTCACACAGGAGAAAAACCTTATGAATGTAATGAATGTGGAAAAGCCTT
CACTCAGAAGTCCAACCTCATTGTCCATCAGAAAACCCACACTGGAGAGAAAACCTATGAATGCACTAAA
TGTGGAGAATCTTTCATACAGAAGCTTGATCTAATTATACATCATAGTACCCATACAGGAAAGAAACCCC
ATGAATGTAATGAGTGTAAGAAAACTTTCAGTGATAAGTCAACTCTCATTATACACCAGAGAACTCATAC
GGGAGAGAAACCTCATAAATGTACTGAATGTGGGAAGTCTTTCAATGAGAAGTCAACCCTCATTGTGCAT
CAAAGAACTCATACAGGAGAGAAACCCTATGAATGTGATGTGTGTGGAAAAACCTTCACGCAAAAGTCAA
ACCTTGGTGTACATCAGAGAACTCATTCAGGAGAGAAACCCTTTGAATGTAATGAATGTGAGAAAGCCTT
CTCTCAGAAGTCCTACCTCATGCTGCATCAGAGAGGTCATACAGGAGAGAAACCTTACGAGTGCAATGAA
TGTGAAAAAGCATTTTCACAGAAATCATATCTCATTATACATCAAAGAACTCATACAGAAGAAAAACCCT
ATAAATGTAATGAATGTGGCAAAGCCTTCAGAGAAAAGTCAAAGCTCATTATACATCAGAGAATTCATAC
AGGAGAGAAACCTTATGAATGTCCTGTGTGTTGGAAAGCTTTTAGCCAGAAGTCACAGCTCATAATACAT
CAGAGAACGCACACGGGAGAGAAACCCTATGCATGCACTGAGTGTGGCAAAGCCTTCCGAGAAAAGTCAA
CATTCACTGTACATCAAAGAACTCATACTGGAGAGAAACCCTATAAATGTACAGAATGTGGGAAAGCCTT
TACCCAAAAATCAAACCTTATTGTACATCAGCGAACCCATGCAGGAAAGAAAGCCCATGGAAGAGGCCAC
ACTCGGAAGTCAAAGTTCATGGCACATTAG

Translation (639 aa):
MTPASASGEDSGSFYSWQKAKREQGLVTFEDVAVDFTQEEWQYLNPPQRTLYRDVMLETYSNLVFVGQQV
TKPNLILKLEVEECPAEGKIPFWNFPEVCQVDEQIERQHQDDQDKCLLMQVGFSDKKTIITKSARDCHEF
GNILHLSTNLVASIQRPDKHESFGNNMVDNLDLFSRSSAENKYDNGCAKLFFHTEYEKTNPGMKPYGYKE
CGKGLRRKKGLSLHQRIKNGEKPFECTACRKTFSKKSHLIVHWRTHTGEKPFGCTECGKAFSQKSQLIIH
LRTHTGERPFECPECGKAFREKSTVIIHYRTHTGEKPYECNECGKAFTQKSNLIVHQKTHTGEKTYECTK
CGESFIQKLDLIIHHSTHTGKKPHECNECKKTFSDKSTLIIHQRTHTGEKPHKCTECGKSFNEKSTLIVH
QRTHTGEKPYECDVCGKTFTQKSNLGVHQRTHSGEKPFECNECEKAFSQKSYLMLHQRGHTGEKPYECNE
CEKAFSQKSYLIIHQRTHTEEKPYKCNECGKAFREKSKLIIHQRIHTGEKPYECPVCWKAFSQKSQLIIH
QRTHTGEKPYACTECGKAFREKSTFTVHQRTHTGEKPYKCTECGKAFTQKSNLIVHQRTHAGKKAHGRGH
TRKSKFMAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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