NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS75061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75061.1 Public Homo sapiens 3 TBCCD1 24 110 108 CCDS HistoryNCBI Gene:55171Re-query CCDS DB by CCDS ID:75061.1Re-query CCDS DB by GeneID:55171See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75061.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446782.5 ENSP00000397091.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446782.5Link to Ensembl Protein Viewer:ENSP00000397091.1Re-query CCDS DB by Nucleotide ID:ENST00000446782Re-query CCDS DB by Protein ID:ENSP00000397091
Original member Current member NCBI NM_001286749.2 NP_001273678.1 Accepted alive Link to Nucleotide Sequence:NM_001286749.2Link to Protein Sequence:NP_001273678.1Re-query CCDS DB by Nucleotide ID:NM_001286749Re-query CCDS DB by Protein ID:NP_001273678Link to BLAST:NP_001273678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273678.1 461 Q9NVR7-2 461 100% 0 0

Chromosomal Locations for CCDS 75061.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 186551150 186551279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186554254 186554751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186554898 186555084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186556409 186556775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186558417 186558572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186570107 186570154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGACAGACCGACTTAAGTTCGGATTCGGCTTCCACCGCTTCTTAGTGCTTTCAGTGGACACGCTACAGT
TTCTGCTCTTCTTATACATTCAACAGTTGAACAAGGTCTCCCTAAGGACATCTTTGATTGGCGAAGAGTG
GCCCAGTCCCAGAAACAAATCTCAGTCTCCTGACCTGACTGAAAAATCTAATTGTCATAATAAGAACTGG
AATGATTACAGTCACCAAGCTTTTGTCTATGATCATCTGTCTGATCTCCTCGAGCTGCTTTTAGATCCAA
AACAACTCACTGCATCATTTCATTCAACCCATAGTAGTCTAGTGTCTCGAGAAGCTGTTGTGGCGCTCAG
CTTCCTTATTGAAGGTACAATAAGTAGAGCCAGGAAGATCTATCCACTTCATGAACTTGCACTGTGGCAA
CCACTGCATGCAGATAGTGGCTTCTCAAAGATCTCTAAGACTTTCTCTTTCTACAAACTGGAAACCTGGT
TGAGGTCCTGTTTGACTGGGAATCCATTTGGTACATCAGCTTGCCTCAAGTCTGGAAAGAAATTGGCTTG
GGCTCATCAAGTTGAAGGGACCACCAAAAGAGCTAAGATTGCTTGTAATACTCATGTGGCCCCTAGGATG
CACCGACTGGTAGTGATGAGCCAGGTTTACAAGCAGACACTGGCTAAGAGCTCAGACACTCTGGCGGGGG
CACATGTAAAGATTCATCGTTGCAACGAATCTTTTATATATCTGCTCTCTCCCTTACGATCTGTGACAAT
TGAGAAGTGCAGGAATAGCATCTTTGTCTTGGGCCCTGTAGGGACTACACTTCACCTCCACAGTTGTGAC
AATGTTAAAGTCATTGCTGTTTGCCATCGTTTGTCCATCTCTTCTACAACAGGTTGCATCTTTCACGTTC
TTACGCCTACACGCCCACTTATTCTCTCTGGGAACCAGACAGTAACTTTTGCCCCTTTTCATACACATTA
CCCAATGCTAGAGGACCATATGGCCAGGACTGGCCTTGCTACAGTGCCTAACTATTGGGATAATCCAATG
GTTGTGTGCAGAGAGAACAGCGACACAAGAGTCTTCCAGCTTTTACCACCTTGTGAATTCTATGTATTTA
TTATTCCCTTTGAAATGGAAGGGGACACAACAGAGATACCCGGGGGTCTTCCATCTGTATATCAGAAAGC
ACTGGGTCAAAGAGAACAGAAGATACAGATCTGGCAGAAAACTGTGAAGGAGGCTCATTTGACAAAGGAT
CAAAGGAAGCAGTTCCAGGTACTGGTAGAGAACAAGTTTTATGAATGGTTGATTAATACAGGACATCGCC
AACAGCTGGACAGCCTTGTACCCCCTGCAGCAGGCTCCAAACAAGCAGCTGGATAA

Translation (461 aa):
MTDRLKFGFGFHRFLVLSVDTLQFLLFLYIQQLNKVSLRTSLIGEEWPSPRNKSQSPDLTEKSNCHNKNW
NDYSHQAFVYDHLSDLLELLLDPKQLTASFHSTHSSLVSREAVVALSFLIEGTISRARKIYPLHELALWQ
PLHADSGFSKISKTFSFYKLETWLRSCLTGNPFGTSACLKSGKKLAWAHQVEGTTKRAKIACNTHVAPRM
HRLVVMSQVYKQTLAKSSDTLAGAHVKIHRCNESFIYLLSPLRSVTIEKCRNSIFVLGPVGTTLHLHSCD
NVKVIAVCHRLSISSTTGCIFHVLTPTRPLILSGNQTVTFAPFHTHYPMLEDHMARTGLATVPNYWDNPM
VVCRENSDTRVFQLLPPCEFYVFIIPFEMEGDTTEIPGGLPSVYQKALGQREQKIQIWQKTVKEAHLTKD
QRKQFQVLVENKFYEWLINTGHRQQLDSLVPPAAGSKQAAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH