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Report for CCDS3840.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
3840.1 |
Public |
Homo sapiens |
4 |
LRP2BP |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:55805](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:3840.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 4 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 3840.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000328559.11 |
ENSP00000332681.7 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000328559.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000332681.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000328559](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000332681](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000505916.6 |
ENSP00000426203.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000505916.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000426203.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000505916](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000426203](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001377440.1 |
NP_001364369.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001377440.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001364369.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001377440](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001364369](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001364369.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001385601.1 |
NP_001372530.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001385601.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001372530.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001385601](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001372530](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001372530.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_018409.4 |
NP_060879.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_018409.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_060879.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_018409](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_060879](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_060879.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 3840.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1044 nt): ATGAAGTTGACCAGTGAAAAGTTGCCCAAGAACCCCTTTTATGCCTCTGTATCTCAGTATGCTGCTAAAA ACCAAAAATTTTTCCAGTGGAAAAAGGAAAAGACTGATTACACCCATGCTAATTTGGTGGATAAGGCATT GCAGCTCTTGAAGGAAAGAATACTGAAAGGAGACACTCTGGCATATTTCCTACGAGGTCAACTATATTTT GAAGAGGGATGGTATGAAGAAGCATTAGAACAGTTTGAAGAAATCAAGGAGAAAGACCATCAAGCAACTT ACCAGCTAGGAGTGATGTACTATGATGGGCTGGGGACCACTCTAGACGCTGAGAAAGGGGTGGACTATAT GAAGAAAATTCTTGATTCTCCATGTCCCAAAGCAAGACACTTAAAATTTGCAGCTGCTTACAACCTCGGA AGAGCTTATTATGAAGGAAAAGGTGTTAAACGATCAAATGAGGAAGCTGAAAGACTGTGGCTTATCGCAG CAGACAATGGAAATCCCAAAGCTAGTGTGAAGGCTCAAAGTATGCTCGGGCTGTATTACTCAACCAAGGA GCCCAAGGAGTTAGAAAAGGCATTTTACTGGCATTCCGAAGCATGTGGCAATGGGAATCTGGAGTCCCAG GGTGCACTTGGGCTCATGTACTTGTATGGACAAGGCATCCGGCAGGATACGGAAGCTGCCCTGCAGTGCT TAAGAGAAGCAGCAGAACGCGGAAACGTCTATGCTCAAGGGAATCTCGTGGAGTATTACTATAAGATGAA ATTTTTTACAAAGTGTGTTGCATTTTCCAAAAGGATCGCTGACTATGATGAGGTTCACGACATCCCCATG ATCGCCCAGGTCACAGACTGTCTCCCGGAGTTCATCGGCAGAGGCATGGCAATGGCATCCTTCTACCACG CAAGGTGTCTTCAGCTTGGCTTGGGCATCACCAGGGATGAAACAACCGCTAAACACTATTATTCTAAAGC TTGTCGTCTGAATCCCGCATTGGCAGATGAACTTCACTCCTTACTTATTCGTCAAAGAATTTAG
Translation (347 aa): MKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDYTHANLVDKALQLLKERILKGDTLAYFLRGQLYF EEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKILDSPCPKARHLKFAAAYNLG RAYYEGKGVKRSNEEAERLWLIAADNGNPKASVKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQ GALGLMYLYGQGIRQDTEAALQCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPM IAQVTDCLPEFIGRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI
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