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Report for CCDS6463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6463.1 Public Homo sapiens 9 PLGRKT 24 110 108 CCDS HistoryNCBI Gene:55848Re-query CCDS DB by CCDS ID:6463.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6463.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000223864.7 ENSP00000223864.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000223864.7Link to Ensembl Protein Viewer:ENSP00000223864.2Re-query CCDS DB by Nucleotide ID:ENST00000223864Re-query CCDS DB by Protein ID:ENSP00000223864
Original member Current member NCBI NM_018465.4 NP_060935.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018465.4Link to Protein Sequence:NP_060935.2Re-query CCDS DB by Nucleotide ID:NM_018465Re-query CCDS DB by Protein ID:NP_060935Link to BLAST:NP_060935.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060935.2 147 Q9HBL7 147 100% 0 0

Chromosomal Locations for CCDS 6463.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 5358239 5358360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5361078 5361187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5361758 5361888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 5431897 5431977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGGGTTTATATTTTCAAAATCTATGAATGAAAGCATGAAAAATCAAAAGGAGTTCATGCTTATGAATG
CTCGACTTCAGCTGGAAAGGCAGCTCATCATGCAGAGTGAAATGAGGGAAAGACAAATGGCCATGCAGAT
TGCGTGGTCTCGGGAATTCCTCAAATATTTTGGAACTTTTTTTGGCCTTGCAGCCATCTCTTTAACAGCT
GGAGCGATTAAAAAAAAGAAGCCAGCCTTCCTGGTCCCGATTGTTCCATTAAGCTTTATCCTCACCTACC
AGTATGACTTGGGCTATGGAACCCTTTTAGAAAGAATGAAAGGTGAAGCTGAGGACATACTGGAAACAGA
AAAGAGTAAATTGCAGCTGCCAAGAGGAATGATCACTTTTGAAAGCATTGAAAAAGCCAGAAAGGAACAG
AGTAGATTCTTCATAGACAAATGA

Translation (147 aa):
MGFIFSKSMNESMKNQKEFMLMNARLQLERQLIMQSEMRERQMAMQIAWSREFLKYFGTFFGLAAISLTA
GAIKKKKPAFLVPIVPLSFILTYQYDLGYGTLLERMKGEAEDILETEKSKLQLPRGMITFESIEKARKEQ
SRFFIDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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