NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS35053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35053.1 Public Homo sapiens 9 NTRK2 24 110 108 CCDS HistoryNCBI Gene:4915Re-query CCDS DB by CCDS ID:35053.1Re-query CCDS DB by GeneID:4915See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35053.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359847.4 ENSP00000352906.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359847.4Link to Ensembl Protein Viewer:ENSP00000352906.3Re-query CCDS DB by Nucleotide ID:ENST00000359847Re-query CCDS DB by Protein ID:ENSP00000352906
Original member Current member EBI ENST00000395882.6 ENSP00000379221.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395882.6Link to Ensembl Protein Viewer:ENSP00000379221.1Re-query CCDS DB by Nucleotide ID:ENST00000395882Re-query CCDS DB by Protein ID:ENSP00000379221
Original member Current member EBI ENST00000688013.1 ENSP00000508443.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688013.1Link to Ensembl Protein Viewer:ENSP00000508443.1Re-query CCDS DB by Nucleotide ID:ENST00000688013Re-query CCDS DB by Protein ID:ENSP00000508443
Original member Current member EBI ENST00000692389.1 ENSP00000508497.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692389.1Link to Ensembl Protein Viewer:ENSP00000508497.1Re-query CCDS DB by Nucleotide ID:ENST00000692389Re-query CCDS DB by Protein ID:ENSP00000508497
Original member Current member EBI ENST00000692506.1 ENSP00000508622.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692506.1Link to Ensembl Protein Viewer:ENSP00000508622.1Re-query CCDS DB by Nucleotide ID:ENST00000692506Re-query CCDS DB by Protein ID:ENSP00000508622
Original member Current member EBI ENST00000691415.1 ENSP00000509058.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691415.1Link to Ensembl Protein Viewer:ENSP00000509058.1Re-query CCDS DB by Nucleotide ID:ENST00000691415Re-query CCDS DB by Protein ID:ENSP00000509058
Original member Current member EBI ENST00000689685.1 ENSP00000509169.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689685.1Link to Ensembl Protein Viewer:ENSP00000509169.1Re-query CCDS DB by Nucleotide ID:ENST00000689685Re-query CCDS DB by Protein ID:ENSP00000509169
Original member Current member EBI ENST00000693109.1 ENSP00000509456.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693109.1Link to Ensembl Protein Viewer:ENSP00000509456.1Re-query CCDS DB by Nucleotide ID:ENST00000693109Re-query CCDS DB by Protein ID:ENSP00000509456
Original member Current member EBI ENST00000687596.1 ENSP00000509999.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687596.1Link to Ensembl Protein Viewer:ENSP00000509999.1Re-query CCDS DB by Nucleotide ID:ENST00000687596Re-query CCDS DB by Protein ID:ENSP00000509999
Original member Current member EBI ENST00000692762.1 ENSP00000510071.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000692762.1Link to Ensembl Protein Viewer:ENSP00000510071.1Re-query CCDS DB by Nucleotide ID:ENST00000692762Re-query CCDS DB by Protein ID:ENSP00000510071
Original member Current member EBI ENST00000689815.1 ENSP00000510451.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689815.1Link to Ensembl Protein Viewer:ENSP00000510451.1Re-query CCDS DB by Nucleotide ID:ENST00000689815Re-query CCDS DB by Protein ID:ENSP00000510451
Original member Current member EBI ENST00000687148.1 ENSP00000510717.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000687148.1Link to Ensembl Protein Viewer:ENSP00000510717.1Re-query CCDS DB by Nucleotide ID:ENST00000687148Re-query CCDS DB by Protein ID:ENSP00000510717
Original member Current member EBI ENST00000690281.1 ENSP00000510757.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000690281.1Link to Ensembl Protein Viewer:ENSP00000510757.1Re-query CCDS DB by Nucleotide ID:ENST00000690281Re-query CCDS DB by Protein ID:ENSP00000510757
Original member Current member NCBI NM_001007097.3 NP_001007098.1 Accepted alive Link to Nucleotide Sequence:NM_001007097.3Link to Protein Sequence:NP_001007098.1Re-query CCDS DB by Nucleotide ID:NM_001007097Re-query CCDS DB by Protein ID:NP_001007098Link to BLAST:NP_001007098.1
Original member Current member NCBI NM_001369539.1 NP_001356468.1 Accepted alive Link to Nucleotide Sequence:NM_001369539.1Link to Protein Sequence:NP_001356468.1Re-query CCDS DB by Nucleotide ID:NM_001369539Re-query CCDS DB by Protein ID:NP_001356468Link to BLAST:NP_001356468.1
Original member Current member NCBI NM_001369540.1 NP_001356469.1 Accepted alive Link to Nucleotide Sequence:NM_001369540.1Link to Protein Sequence:NP_001356469.1Re-query CCDS DB by Nucleotide ID:NM_001369540Re-query CCDS DB by Protein ID:NP_001356469Link to BLAST:NP_001356469.1
Original member Current member NCBI NM_001369541.1 NP_001356470.1 Accepted alive Link to Nucleotide Sequence:NM_001369541.1Link to Protein Sequence:NP_001356470.1Re-query CCDS DB by Nucleotide ID:NM_001369541Re-query CCDS DB by Protein ID:NP_001356470Link to BLAST:NP_001356470.1
Original member Current member NCBI NM_001369542.1 NP_001356471.1 Accepted alive Link to Nucleotide Sequence:NM_001369542.1Link to Protein Sequence:NP_001356471.1Re-query CCDS DB by Nucleotide ID:NM_001369542Re-query CCDS DB by Protein ID:NP_001356471Link to BLAST:NP_001356471.1
Original member Current member NCBI NM_001369543.1 NP_001356472.1 Accepted alive Link to Nucleotide Sequence:NM_001369543.1Link to Protein Sequence:NP_001356472.1Re-query CCDS DB by Nucleotide ID:NM_001369543Re-query CCDS DB by Protein ID:NP_001356472Link to BLAST:NP_001356472.1
Original member Current member NCBI NM_001369544.1 NP_001356473.1 Accepted alive Link to Nucleotide Sequence:NM_001369544.1Link to Protein Sequence:NP_001356473.1Re-query CCDS DB by Nucleotide ID:NM_001369544Re-query CCDS DB by Protein ID:NP_001356473Link to BLAST:NP_001356473.1
Original member Current member NCBI NM_001369545.1 NP_001356474.1 Accepted alive Link to Nucleotide Sequence:NM_001369545.1Link to Protein Sequence:NP_001356474.1Re-query CCDS DB by Nucleotide ID:NM_001369545Re-query CCDS DB by Protein ID:NP_001356474Link to BLAST:NP_001356474.1
Original member Current member NCBI NM_001369548.1 NP_001356477.1 Accepted alive Link to Nucleotide Sequence:NM_001369548.1Link to Protein Sequence:NP_001356477.1Re-query CCDS DB by Nucleotide ID:NM_001369548Re-query CCDS DB by Protein ID:NP_001356477Link to BLAST:NP_001356477.1
Original member Current member NCBI NM_001369549.1 NP_001356478.1 Accepted alive Link to Nucleotide Sequence:NM_001369549.1Link to Protein Sequence:NP_001356478.1Re-query CCDS DB by Nucleotide ID:NM_001369549Re-query CCDS DB by Protein ID:NP_001356478Link to BLAST:NP_001356478.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007098.1 477 Q16620-2 477 100% 0 0
NP_001356468.1 477 Q16620-2 477 100% 0 0
NP_001356469.1 477 Q16620-2 477 100% 0 0
NP_001356470.1 477 Q16620-2 477 100% 0 0
NP_001356471.1 477 Q16620-2 477 100% 0 0
NP_001356472.1 477 Q16620-2 477 100% 0 0
NP_001356473.1 477 Q16620-2 477 100% 0 0
NP_001356474.1 477 Q16620-2 477 100% 0 0
NP_001356477.1 477 Q16620-2 477 100% 0 0
NP_001356478.1 477 Q16620-2 477 100% 0 0

Chromosomal Locations for CCDS 35053.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 84670749 84670960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84702159 84702233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84702348 84702419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84707844 84707912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84710637 84710791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84723573 84723709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84724224 84724356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84727654 84727959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84741892 84741927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84744973 84745073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84751986 84752085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 84810542 84810579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1434 nt):
ATGTCGTCCTGGATAAGGTGGCATGGACCCGCCATGGCGCGGCTCTGGGGCTTCTGCTGGCTGGTTGTGG
GCTTCTGGAGGGCCGCTTTCGCCTGTCCCACGTCCTGCAAATGCAGTGCCTCTCGGATCTGGTGCAGCGA
CCCTTCTCCTGGCATCGTGGCATTTCCGAGATTGGAGCCTAACAGTGTAGATCCTGAGAACATCACCGAA
ATTTTCATCGCAAACCAGAAAAGGTTAGAAATCATCAACGAAGATGATGTTGAAGCTTATGTGGGACTGA
GAAATCTGACAATTGTGGATTCTGGATTAAAATTTGTGGCTCATAAAGCATTTCTGAAAAACAGCAACCT
GCAGCACATCAATTTTACCCGAAACAAACTGACGAGTTTGTCTAGGAAACATTTCCGTCACCTTGACTTG
TCTGAACTGATCCTGGTGGGCAATCCATTTACATGCTCCTGTGACATTATGTGGATCAAGACTCTCCAAG
AGGCTAAATCCAGTCCAGACACTCAGGATTTGTACTGCCTGAATGAAAGCAGCAAGAATATTCCCCTGGC
AAACCTGCAGATACCCAATTGTGGTTTGCCATCTGCAAATCTGGCCGCACCTAACCTCACTGTGGAGGAA
GGAAAGTCTATCACATTATCCTGTAGTGTGGCAGGTGATCCGGTTCCTAATATGTATTGGGATGTTGGTA
ACCTGGTTTCCAAACATATGAATGAAACAAGCCACACACAGGGCTCCTTAAGGATAACTAACATTTCATC
CGATGACAGTGGGAAGCAGATCTCTTGTGTGGCGGAAAATCTTGTAGGAGAAGATCAAGATTCTGTCAAC
CTCACTGTGCATTTTGCACCAACTATCACATTTCTCGAATCTCCAACCTCAGACCACCACTGGTGCATTC
CATTCACTGTGAAAGGCAACCCCAAACCAGCGCTTCAGTGGTTCTATAACGGGGCAATATTGAATGAGTC
CAAATACATCTGTACTAAAATACATGTTACCAATCACACGGAGTACCACGGCTGCCTCCAGCTGGATAAT
CCCACTCACATGAACAATGGGGACTACACTCTAATAGCCAAGAATGAGTATGGGAAGGATGAGAAACAGA
TTTCTGCTCACTTCATGGGCTGGCCTGGAATTGACGATGGTGCAAACCCAAATTATCCTGATGTAATTTA
TGAAGATTATGGAACTGCAGCGAATGACATCGGGGACACCACGAACAGAAGTAATGAAATCCCTTCCACA
GACGTCACTGATAAAACCGGTCGGGAACATCTCTCGGTCTATGCTGTGGTGGTGATTGCGTCTGTGGTGG
GATTTTGCCTTTTGGTAATGCTGTTTCTGCTTAAGTTGGCAAGACACTCCAAGTTTGGCATGAAAGGTTT
TGTTTTGTTTCATAAGATCCCACTGGATGGGTAG

Translation (477 aa):
MSSWIRWHGPAMARLWGFCWLVVGFWRAAFACPTSCKCSASRIWCSDPSPGIVAFPRLEPNSVDPENITE
IFIANQKRLEIINEDDVEAYVGLRNLTIVDSGLKFVAHKAFLKNSNLQHINFTRNKLTSLSRKHFRHLDL
SELILVGNPFTCSCDIMWIKTLQEAKSSPDTQDLYCLNESSKNIPLANLQIPNCGLPSANLAAPNLTVEE
GKSITLSCSVAGDPVPNMYWDVGNLVSKHMNETSHTQGSLRITNISSDDSGKQISCVAENLVGEDQDSVN
LTVHFAPTITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN
PTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGIDDGANPNYPDVIYEDYGTAANDIGDTTNRSNEIPST
DVTDKTGREHLSVYAVVVIASVVGFCLLVMLFLLKLARHSKFGMKGFVLFHKIPLDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH