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Report for CCDS24457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24457.1 Public Mus musculus 11 Slc1a4 23 108 98 CCDS HistoryNCBI Gene:55963Re-query CCDS DB by CCDS ID:24457.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109594.7 ENSMUSP00000105223.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109594.7Link to Ensembl Protein Viewer:ENSMUSP00000105223.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109594Re-query CCDS DB by Protein ID:ENSMUSP00000105223
Original member NCBI NM_018861.3 NP_061349.3 Updated not alive Link to Nucleotide Sequence:NM_018861.3Link to Protein Sequence:NP_061349.3Re-query CCDS DB by Nucleotide ID:NM_018861Re-query CCDS DB by Protein ID:NP_061349
Current member NCBI NM_018861.4 NP_061349.3 Accepted alive Link to Nucleotide Sequence:NM_018861.4Link to Protein Sequence:NP_061349.3Re-query CCDS DB by Nucleotide ID:NM_018861Re-query CCDS DB by Protein ID:NP_061349Link to BLAST:NP_061349.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061349.3 532 O35874 532 100% 0 0

Chromosomal Locations for CCDS 24457.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 20304266 20304500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20306466 20306600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20307892 20308086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20308404 20308637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20313916 20314082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20318660 20318722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20320192 20320234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 20331946 20332472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGAGAAGAGCGGCGAGACCAACGGCTACCTCGACGGCACCCAGGCAGAGCCTGCGGCCGGGCCCCGAA
CGCCCGAGACGGCGATGGGCAAATCGCAGCGCTGTGCTAGCTTTTTTCGGCGCCACGCGCTGGTGCTGCT
CACCGTGTCGGGAGTGTTGGTGGGTGCCGGCATGGGCGCGGCGCTGAGGGGGCTGCAGCTCACCCGCACC
CAGATCACTTACCTGGCCTTCCCGGGCGAGATGCTGCTCCGCATGCTGCGCATGATCATCCTGCCGCTGG
TGGTTTGCAGCCTGGTGTCGGGAGCCGCCTCCCTGGATGCCAGCTCCCTCGGGCGTCTGGGTGGCATCGC
TGTTGCTTACTTCGGCCTCACCACGCTGAGCGCCTCGGCTCTCGCCGTTGCTCTGGCGTTCATCATCAAG
CCAGGGGCGGGCGCGCAGACCCTCCAGTCCAGCAGCCTGGGGCTGGAGAACTCAGGGCCTCCTCCGGTCT
CCAAAGAGACAGTGGACTCTTTCCTCGATTTACTCAGAAACCTGTTCCCTTCCAATCTTGTGGTTGCCGC
ATTCACTACGTCTGCAACCGATTACACAGTGGTGACCCATAACACCAGCTCGGGGAACGTGACCAAAGAG
AAGATCCCCGTTGTAACAGATGTGGAAGGGATGAACATTTTAGGTCTCGTCCTTTTTGCCCTGGTGTTAG
GAGTGGCTCTAAAGAAGCTAGGCCCCGAGGGAGAAGACCTCATCCGATTCTTCAATTCCTTCAATGAGGC
CACAATGGTGCTGGTGTCATGGATCATGTGGTATGTTCCTATAGGCATCATGTTCCTGATCGGAAGCAAG
ATTGTAGAAATGAAGGACATCGTCATGCTGGTGACCAGTCTCGGGAAATACATCTTCGCATCTATGCTGG
GCCATGTCATCCACGGAGGAATTGTCCTGCCTCTTGTGTATTTTGCTTTCACAAGGAAAAACCCGTTCAC
GTTCCTCCTGGGCCTCCTCACCCCATTTGCGACAGCTTTTGCGACCTGTTCCAGCTCAGCAACCCTTCCG
TCTATGATGAAGTGCATTGAGGAGAACAATGGTGTAGACAAGAGGATCAGCAGGTTCATCCTCCCCATTG
GGGCCACGGTCAACATGGACGGAGCAGCCATCTTCCAGTGTGTGGCCGCAGTGTTCATTGCCCAGCTCAA
CAACGTAGACCTGAACGCAGGACAGATTTTCACCATTCTAGTGACTGCCACGGCATCCAGTGTTGGAGCA
GCAGGTGTGCCGGCTGGGGGTGTCCTCACAATTGCCATCATCTTGGAGGCCATTGGATTGCCCACACATG
ACCTCTCTCTGATCCTGGCTGTGGACTGGATTGTGGACCGGACCACCACTGTGGTGAATGTGGAAGGGGA
TGCCCTGGGAGCGGGGATCCTCAACCACCTGAATCAGAAGGTAGTGAAGAAAGGTGAGCAGGAGCTACAA
GAAGTGAAGGTGGAAGCCATTCCCAATTCCAAGTCTGAGGAGGAGACGTCGCCTCTGGTGACACACCAGA
ACCCAGCAGGCCCTGTGGCCATTGCTCCTGAACTTGAATCCAAGGAGTCAGTGCTGTGA

Translation (532 aa):
MEKSGETNGYLDGTQAEPAAGPRTPETAMGKSQRCASFFRRHALVLLTVSGVLVGAGMGAALRGLQLTRT
QITYLAFPGEMLLRMLRMIILPLVVCSLVSGAASLDASSLGRLGGIAVAYFGLTTLSASALAVALAFIIK
PGAGAQTLQSSSLGLENSGPPPVSKETVDSFLDLLRNLFPSNLVVAAFTTSATDYTVVTHNTSSGNVTKE
KIPVVTDVEGMNILGLVLFALVLGVALKKLGPEGEDLIRFFNSFNEATMVLVSWIMWYVPIGIMFLIGSK
IVEMKDIVMLVTSLGKYIFASMLGHVIHGGIVLPLVYFAFTRKNPFTFLLGLLTPFATAFATCSSSATLP
SMMKCIEENNGVDKRISRFILPIGATVNMDGAAIFQCVAAVFIAQLNNVDLNAGQIFTILVTATASSVGA
AGVPAGGVLTIAIILEAIGLPTHDLSLILAVDWIVDRTTTVVNVEGDALGAGILNHLNQKVVKKGEQELQ
EVKVEAIPNSKSEEETSPLVTHQNPAGPVAIAPELESKESVL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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