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Report for CCDS71321.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71321.1 Public Mus musculus 3 Npnt 23 108 98 CCDS HistoryNCBI Gene:114249Re-query CCDS DB by CCDS ID:71321.1Re-query CCDS DB by GeneID:114249See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71321.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117456.7 ENSMUSP00000112816.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117456.7Link to Ensembl Protein Viewer:ENSMUSP00000112816.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117456Re-query CCDS DB by Protein ID:ENSMUSP00000112816
Original member Current member NCBI NM_001287103.1 NP_001274032.1 Accepted alive Link to Nucleotide Sequence:NM_001287103.1Link to Protein Sequence:NP_001274032.1Re-query CCDS DB by Nucleotide ID:NM_001287103Re-query CCDS DB by Protein ID:NP_001274032Link to BLAST:NP_001274032.1

Chromosomal Locations for CCDS 71321.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 132884430 132884513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132885756 132886012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132890764 132890862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132891402 132891488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132904658 132905053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132906347 132906469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132906695 132906829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132908343 132908462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 132909896 132909968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGAACACTTTCGGCAGCTACAAGTGCTACTGTCTCAACGGATACATGCTGCTGCCAGACGGGTCCTGCT
CAAGTGCCCTATCGTGTTCCATGGCAAACTGTCAGTATGGCTGTGACGTGGTCAAAGGACAGGTCCGATG
TCAGTGTCCATCCCCTGGCCTGCAGCTAGCTCCCGATGGGAGGACCTGTGTGGATATTGATGAATGTGCG
ACTGGAAGAGTCTCCTGCCCTCGATTTAGGCAGTGTGTCAACACGTTTGGGAGCTACATCTGCAAGTGTC
ACACTGGTTTCGACCTCATGTACATTGGAGGCAAATATCAGTGCCATGACATCGACGAGTGCTCTCTTGG
ACAGCACCAGTGTAGCAGCTATGCCCGGTGTTACAACATACATGGGTCCTACAAGTGCCAATGTAGAGAT
GGATACGAGGGGGATGGACTGAACTGTGTGTATATCCCCAAAGTCATGATTGAACCTTCAGGTCCAATCC
ATATGCCAGAAAGAAATGGTACAATCTCAAAGGGTGATGGAGGACATGCGAATAGGATTCCTGATGCTGG
AAGTACAAGGTGGCCCCTGAAGACACCATATATTCCTCCTGTCATTACCAACAGGCCTACTTCCAAGCCA
ACAACAAGACCTACACCAAACCCAACACCACAGCCTACTCCACCACCTCCACCACCCCTCCCGACAGAGC
CCAGAACAACTCCACTACCACCAACCCCAGAAAGGCCATCTACCAGACCCACCACTATAGCACCTGCTAC
CAGTACCACTACACGAGTAATTACGGTTGACAACAGGATACAGACGGATCCTCAGAAACCCAGAGGAGAT
GTGTTCATTCCACGGCAGCCGACAAATGACCTGTTTGAGATATTTGAAATCGAAAGAGGGGTCAGCGCGG
ATGAGGAAGTAAAGGACGACCCAGGTATTCTCATACACAGCTGCAATTTTGACCATGGACTCTGTGGATG
GATCAGAGAAAAAGATAGTGACTTGCACTGGGAGACAGCCAGGGACCCAGCAGGTGGACAGTATCTCACA
GTGTCTGCAGCCAAAGCCCCGGGGGGAAAAGCCGCTCGCTTGGTGTTACGTCTCGGCCACCTCATGCATT
CAGGGGACCTGTGCCTGTCCTTTAGGCACAAGGTGACTGGGCTGCACTCGGGCACACTGCAGGTGTTTGT
GAGGAAACACGGTACCCACGGAGCAGCCCTGTGGGGAAGAAATGGTGGCCATGGCTGGAGGCAAACCCAG
ATCACCTTGCGAGGGGCTGACGTCAAAAGCGTCATCTTCAAAGGTGAAAAAAGGCGTGGTCACACGGGGG
AGATTGGATTGGATGATGTGAGCTTGAAAAGAGGTCGCTGCTGA

Translation (457 aa):
MNTFGSYKCYCLNGYMLLPDGSCSSALSCSMANCQYGCDVVKGQVRCQCPSPGLQLAPDGRTCVDIDECA
TGRVSCPRFRQCVNTFGSYICKCHTGFDLMYIGGKYQCHDIDECSLGQHQCSSYARCYNIHGSYKCQCRD
GYEGDGLNCVYIPKVMIEPSGPIHMPERNGTISKGDGGHANRIPDAGSTRWPLKTPYIPPVITNRPTSKP
TTRPTPNPTPQPTPPPPPPLPTEPRTTPLPPTPERPSTRPTTIAPATSTTTRVITVDNRIQTDPQKPRGD
VFIPRQPTNDLFEIFEIERGVSADEEVKDDPGILIHSCNFDHGLCGWIREKDSDLHWETARDPAGGQYLT
VSAAKAPGGKAARLVLRLGHLMHSGDLCLSFRHKVTGLHSGTLQVFVRKHGTHGAALWGRNGGHGWRQTQ
ITLRGADVKSVIFKGEKRRGHTGEIGLDDVSLKRGRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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