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Report for CCDS54922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54922.1 Public Homo sapiens 5 PCDHGA1 24 110 108 CCDS HistoryNCBI Gene:56114Re-query CCDS DB by CCDS ID:54922.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54922.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000517417.3 ENSP00000431083.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000517417.3Link to Ensembl Protein Viewer:ENSP00000431083.1Re-query CCDS DB by Nucleotide ID:ENST00000517417Re-query CCDS DB by Protein ID:ENSP00000431083
Original member Current member NCBI NM_018912.3 NP_061735.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018912.3Link to Protein Sequence:NP_061735.1Re-query CCDS DB by Nucleotide ID:NM_018912Re-query CCDS DB by Protein ID:NP_061735Link to BLAST:NP_061735.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061735.1 931 Q9Y5H4-1 931 100% 0 0

Chromosomal Locations for CCDS 54922.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141330685 141333105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2796 nt):
ATGAAGATTCAGAAAAAGCTGACTGGCTGCAGCAGGCTGATGCTTCTGTGTCTTTCTCTGGAGCTGCTGT
TGGAAGCTGGGGCTGGGAATATTCACTACTCAGTGCCGGAAGAGACAGACAAAGGTTCCTTCGTAGGCAA
CATCGCCAAGGACCTAGGGCTGCAACCCCAGGAGCTGGCAGATGGCGGAGTCCGCATCGTCTCCAGAGGT
AGGATGCCGCTTTTCGCTCTGAATCCTAGAAGTGGCAGCTTGATCACCGCGCGCAGGATAGACCGGGAGG
AGCTCTGCGCTCAGAGCATGCCGTGTCTCGTGAGTTTTAATATCCTTGTTGAGGATAAAATGAAGCTTTT
TCCTGTTGAAGTAGAAATAATTGATATTAATGACAACACTCCCCAATTCCAGTTAGAGGAACTGGAGTTT
AAAATGAATGAAATAACGACTCCAGGTACCAGAGTCTCATTGCCTTTTGGGCAAGACCTTGATGTGGGTA
TGAACTCACTCCAGAGCTACCAACTCAGCTCTAACCCTCATTTCTCCCTGGATGTGCAACAGGGAGCCGA
TGGGCCTCAACATCCAGAGATGGTGCTGCAGAGTCCCTTAGACAGAGAAGAAGAAGCTGTCCACCACCTC
ATCCTCACAGCTTCTGATGGGGGTGAACCAGTCCGTTCAGGGACCCTCAGAATTTACATTCAGGTGGTGG
ATGCAAATGACAATCCTCCAGCATTTACTCAGGCACAATACCATATAAATGTCCCCGAAAACGTGCCGCT
GGGTACTCAGCTGCTCATGGTAAATGCCACTGACCCTGATGAGGGAGCCAATGGGGAAGTAACGTACTCC
TTTCACAATGTAGACCACAGAGTGGCCCAAATATTTCGTTTAGATTCTTACACAGGAGAAATATCAAATA
AAGAACCACTAGATTTCGAAGAATACAAAATGTATTCAATGGAAGTTCAAGCCCAGGATGGTGCGGGGCT
CATGGCTAAAGTTAAGGTACTGATCAAAGTTTTGGATGTAAATGATAATGCCCCAGAAGTGACCATCACC
TCTGTCACCACTGCAGTTCCAGAAAACTTTCCTCCTGGGACCATAATTGCTCTTATCAGTGTGCATGACC
AGGACTCAGGAGACAATGGCTACACCACATGTTTCATTCCTGGAAATTTACCCTTTAAATTGGAAAAGTT
AGTTGATAATTATTACCGTTTAGTGACTGAAAGAACACTGGACAGAGAACTTATCTCTGGGTACAACATC
ACAATAACAGCAATAGACCAAGGAACTCCAGCTCTATCTACTGAAACTCACATTTCACTACTAGTGACAG
ATATCAATGACAACTCCCCAGTCTTCCATCAGGACTCCTACTCTGCCTACATTCCCGAAAACAACCCCAG
AGGAGCCTCCATCTTCTCTGTGAGGGCCCACGACTTGGACAGCAATGAGAATGCACAAATCACTTACTCC
CTAATAGAGGACACTATCCAGGGGGCACCCCTATCTGCCTACCTCTCCATCAACTCCGACACTGGGGTCC
TGTATGCGCTGCGATCCTTCGACTATGAGCAGTTCCGGGACATGCAACTGAAAGTGATGGCGCGGGACAG
TGGGGATCCGCCCCTCAGCAGCAACGTGTCTCTCAGCCTATTCCTGCTGGACCAGAACGACAACGCGCCC
GAGATCCTGTACCCCGCCCTCCCCACAGATGGTTCTACCGGCGTGGAGCTGGCGCCCCTCTCCGCAGAGC
CCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACAGAGACTCGGGCCAGAACGCCTGGCTGTCCTACCG
CCTGCTCAAGGCCAGCGAGCCGGGACTCTTCTCGGTGGGTCTGCACACGGGCGAGGTGCGCACGGCGCGA
GCCCTGCTGGACAGAGACGCGCTCAAGCAGAGTCTCGTGGTGGCCGTCCAGGACCACGGCCAGCCCCCGC
TCTCCGCCACTGTCACGCTCACCGTGGCCGTGGCCGACAGGATCTCCGACATCCTGGCCGACCTGGGCAG
CCTCGAGCCCTCCGCCAAACCCAACGATTCGGACCTCACTCTGTACCTGGTGGTGGCGGCGGCCGCGGTC
TCCTGCGTCTTCCTGGCCTTCGTCATCGTGCTGCTGGCGCACAGGCTGCGGCGCTGGCACAAGTCACGTC
TGCTACAGGCTTCGGGAGGCGGCTTAGCGAGCATGCCCGGTTCGCACTTTGTGGGCGTGGACGGGGTTCG
GGCTTTCCTGCAGACCTATTCCCACGAGGTCTCCCTCACTGCGGACTCGCGGAAGAGCCACCTGATTTTC
CCCCAGCCCAACTATGCGGACACACTCATCAGCCAGGAGAGCTGTGAGAAAAAGGGTTTTCTATCAGCAC
CCCAGTCTTTACTTGAAGACAAAAAGGAACCATTTTCTCAGCAAGCCCCGCCCAACACGGACTGGCGTTT
CTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAAC
CAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCA
CCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCACGT
GCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAGCGG
GATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (931 aa):
MKIQKKLTGCSRLMLLCLSLELLLEAGAGNIHYSVPEETDKGSFVGNIAKDLGLQPQELADGGVRIVSRG
RMPLFALNPRSGSLITARRIDREELCAQSMPCLVSFNILVEDKMKLFPVEVEIIDINDNTPQFQLEELEF
KMNEITTPGTRVSLPFGQDLDVGMNSLQSYQLSSNPHFSLDVQQGADGPQHPEMVLQSPLDREEEAVHHL
ILTASDGGEPVRSGTLRIYIQVVDANDNPPAFTQAQYHINVPENVPLGTQLLMVNATDPDEGANGEVTYS
FHNVDHRVAQIFRLDSYTGEISNKEPLDFEEYKMYSMEVQAQDGAGLMAKVKVLIKVLDVNDNAPEVTIT
SVTTAVPENFPPGTIIALISVHDQDSGDNGYTTCFIPGNLPFKLEKLVDNYYRLVTERTLDRELISGYNI
TITAIDQGTPALSTETHISLLVTDINDNSPVFHQDSYSAYIPENNPRGASIFSVRAHDLDSNENAQITYS
LIEDTIQGAPLSAYLSINSDTGVLYALRSFDYEQFRDMQLKVMARDSGDPPLSSNVSLSLFLLDQNDNAP
EILYPALPTDGSTGVELAPLSAEPGYLVTKVVAVDRDSGQNAWLSYRLLKASEPGLFSVGLHTGEVRTAR
ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVADRISDILADLGSLEPSAKPNDSDLTLYLVVAAAAV
SCVFLAFVIVLLAHRLRRWHKSRLLQASGGGLASMPGSHFVGVDGVRAFLQTYSHEVSLTADSRKSHLIF
PQPNYADTLISQESCEKKGFLSAPQSLLEDKKEPFSQQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNN
QFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKR
DGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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