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Report for CCDS4256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4256.1 Public Homo sapiens 5 PCDHB14 24 110 108 CCDS HistoryNCBI Gene:56122Re-query CCDS DB by CCDS ID:4256.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4256.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239449.7 ENSP00000239449.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239449.7Link to Ensembl Protein Viewer:ENSP00000239449.4Re-query CCDS DB by Nucleotide ID:ENST00000239449Re-query CCDS DB by Protein ID:ENSP00000239449
Original member Current member NCBI NM_018934.4 NP_061757.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018934.4Link to Protein Sequence:NP_061757.1Re-query CCDS DB by Nucleotide ID:NM_018934Re-query CCDS DB by Protein ID:NP_061757Link to BLAST:NP_061757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061757.1 798 Q9Y5E9-1 798 100% 0 0

Chromosomal Locations for CCDS 4256.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141223506 141225902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGGAGATCAGAGGGGCACTCGATCTGCGAAAAAGGCAAGTTCTAATATTCCTTGTTTTGCTGGGATTGT
CTCGGGCAGGTACTGAATCTGCACACTATTCTGTGGCAGAGGAAACAGAAATTGGCTCTTTTGTGGCTAA
TCTAGCGAGGGACCTAGGGCTGGGGGTGGAGGAGCTGTCTTCACGTGAAGCCCGGGTAGTGTCTGATGAT
AATAAAAAGTATTTGCACCTTGATTTGCTGACTGGGAATTTGCTCCTAAATGAGAAACTAGACCGAGACG
AGCTGTGTGGCTCCACCGAGCCCTGTGTGCTGCATTTTCAGGTGGTTTTGGAAAACCCTTTACAGTTTTT
TCGGTTTGAGCTGTGTGTCAAAGACATAAATGATCACTCCCCTACATTTCTAGACAAGGAAATACTTATT
AAAATATCAGAAGGTACCACTGTTGGAGCTACCTTTCTAATGGAGAGTGCTCAAGATTTGGATGTCGGAA
GCAACAGTCTCCAAAACTACACAATTAGCCCCAATTCTCACTTCTACATTAAAATTCCCGACAGTAGTGA
CAGAAAGATATACCCAGAGCTGGTCCTAGATAGAGCTTTAGATTATGAACAGGAAGCTGAACTCAGATTA
ACACTCACAGCAGTGGATGGTGGATCCCCGCCCAAGTCTGGGACAACTTTGGTTCTCATCAAGGTGTTGG
ACATCAATGATAATGCCCCTGAGTTTCCTCAGAGTCTCTATGAGGTGCAAGTCCCCGAGGACAGACCCCT
TGGCTCCTGGATTGCCACCATCTCAGCTAAGGATCTGGATGCAGGAAACTATGGAAAAATATCTTACACA
TTTTTCCATGCATCAGAAGATATTCGTAAAACATTTGAAATTAATCCAATATCTGGGGAAGTTAATTTGA
GATCACCCCTGGATTTTGAAGTAATACAGTCCTACACTATAAATATTCAGGCAACAGATGGTGGGGGTCT
TTCAGGAAAATGCACCCTTCTAGTTAAAGTTATGGATATAAACGACAACCCACCAGAAGTGACCATATCG
TCGATTACAAAGAGAATTCCAGAGAATGCCTCAGAGACCCTAGTAGCTCTTTTTAGTATCCTAGACCAAG
ACTCTGGAGACAATGGGAGGATGATTTGCTCTATTCAAGATAACCTCCCTTTTTTCCTGAAACCGACCTT
CAAGAACTTTTTCACTCTAGTTTCTGAAAAAGCACTGGACAGAGAGAGCCAAGCCGAGTACAACATCACG
ATCACCGTCACAGACTTGGGGACACCCAGGCTGAAAACCGAGTACAACATAACCGTGCTGCTCTCTGACG
TCAATGACAACGCCCCCACCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGC
CCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCAGGCACCAACGCCCAGGTCAACTACTCGCTG
CTGCCGCCCCAGGACCGGCACCTGCCCCTCGCCTCCTTGGTCTCCATCAACGCGGACAATGGCCACCTGT
TTGCCCTCAGGTCGCTGGACTACGAGGCCCTACAGGAGTTCGAGTTTCGCGTGGGCGCCACAGACCGCGG
GTCCCCGGCGTTGAGCAGCGAGGCGCTGGTGCGCGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC
GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCT
ACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCT
CAAGGCCACGGAGCCCGGGCTGTTCGGCGTGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGGCTGCTG
AGCGAGCGCGACGCGGCCAAGCACAGGCTGGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCTCGCTCGG
CCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCGCTCCCTGAGGCGGC
CCCGGCCCAGGCCCAGGCCGACTCCCTCACCGTCTACCTGGTGGTGGCATTGGCCTCGGTGTCGTCGCTC
TTCCTCTTCTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTGGGTC
GCTGCTCGGTGCCCGAGGGTCCCTTTCCAGGGCATCTGGTGGACGTGAGCGGCACCGGGACCCTGTCCCA
GAGCTACCAATACGAGGTGTGTCTGACAGGAGGTTCCGGGACAAATGAGTTCAAATTTCTGAAGCCGATT
ATCCCCAATTTTCAAGTTCATGACACTGGTAGGAATATGGGGGAAATCGAGAACTTTCGAAATAGCTTTG
GACTTAACATTCAATAA

Translation (798 aa):
MEIRGALDLRKRQVLIFLVLLGLSRAGTESAHYSVAEETEIGSFVANLARDLGLGVEELSSREARVVSDD
NKKYLHLDLLTGNLLLNEKLDRDELCGSTEPCVLHFQVVLENPLQFFRFELCVKDINDHSPTFLDKEILI
KISEGTTVGATFLMESAQDLDVGSNSLQNYTISPNSHFYIKIPDSSDRKIYPELVLDRALDYEQEAELRL
TLTAVDGGSPPKSGTTLVLIKVLDINDNAPEFPQSLYEVQVPEDRPLGSWIATISAKDLDAGNYGKISYT
FFHASEDIRKTFEINPISGEVNLRSPLDFEVIQSYTINIQATDGGGLSGKCTLLVKVMDINDNPPEVTIS
SITKRIPENASETLVALFSILDQDSGDNGRMICSIQDNLPFFLKPTFKNFFTLVSEKALDRESQAEYNIT
ITVTDLGTPRLKTEYNITVLLSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVNYSL
LPPQDRHLPLASLVSINADNGHLFALRSLDYEALQEFEFRVGATDRGSPALSSEALVRVLVLDANDNSPF
VLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL
SERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSL
FLFSVLLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPI
IPNFQVHDTGRNMGEIENFRNSFGLNIQ


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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