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Report for CCDS4241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4241.1 Public Homo sapiens 5 PCDHAC1 24 110 108 CCDS HistoryNCBI Gene:56135Re-query CCDS DB by CCDS ID:4241.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253807.3 ENSP00000253807.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253807.3Link to Ensembl Protein Viewer:ENSP00000253807.2Re-query CCDS DB by Nucleotide ID:ENST00000253807Re-query CCDS DB by Protein ID:ENSP00000253807
Original member Current member NCBI NM_018898.5 NP_061721.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018898.5Link to Protein Sequence:NP_061721.2Re-query CCDS DB by Nucleotide ID:NM_018898Re-query CCDS DB by Protein ID:NP_061721Link to BLAST:NP_061721.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061721.2 963 Q9H158-1 963 100% 0 0

Chromosomal Locations for CCDS 4241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140926893 140929325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140978949 140979007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140982475 140982563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141009627 141009937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2892 nt):
ATGGTGGGCTGTGGGGTGGCAGTTTTATGTTTGTGGGTTTCCTGCGGCGCTGCAGCGGGACAGCTCGAGT
ACTCAGTGCCGGAGGAGACGGAGCGGGGCGTAGCCGTAGGCAATCTCTCCGCGGACTTGAGGCTGCCAGC
GGCCGCTATGTCCTCGCGGAACTTTCGCTTCCTTTCCAGCCACCGCGAGCTCTACTTCGGGGTGGATCTA
CCCAGCGGCAATTTGGTGGTCAGAGAGCCGGCGGACCGCGAACAGCTGTGCAGGGCCAAAGCTGCCTGCG
TCTTGACCTACGACCTGGTGCTCGAGGACCCGCTGGAGCTGCACAAGATTCGGATTCACGTCCTGGACAC
CAATGACAACTCACCTCTCTTTCCTGCCGGCGACGTGCAGCTGCACATCCCCGAGTTCCTGACGCCCGGA
GCCCGCTTTACTCTCCCGAATGCCCAAGATGACGACGAGGGAAGCAATGGGATACTAAGCTACAGCCTAA
GCCCCAGTCAGCACTTTCGCCTGGACATGGGATCGCGGGTTGACGGCAGCGAATACCCGGAGTTGGTGTT
GGAGAAAGCACTGGATCGCGAACAGCGCGCCACCCACCTGCTGGTGCTTACAGCTCGGGACGGCGGGCTA
CCTGCCCGCTCAGGAGACGCACAAGTCACCATCATTGTGGTGGACACAAATGACAACGCGCCTGTATTTG
AGCGCTCCGTATACCGCACCAAGGTTCCAGAGACTGCACCCAATGGGACTGTGTTATTCCGAGTTCAAGC
CTTGGATCCAGATGAAGGGTCCAATGGGGAAGTCCAGTACTCCCTAAGCAACAGCACGCAAGCAGAGCTG
CGACACCGCTTTCACGTGCACCCTAAAAGTGGGGAGGTGCAAGTAGCTGCTTCACTAGGTCCGCCTGAAA
CGCTCTTGGAGGCATACATTGAGGCGAGGGACGAAGGTGTCTTTGGTTTAGCTAGCACCGCTAAACTGCT
GGTGGAGGTGACTGACGTGAACGATCATGCCCCCGAACTGGACTTCCTGACTCTTTCGAACCCAGTACCT
GAGGACGCTGCCCCTGGCACAGTGATTGCTCTCTTTAGTGTAAAGGATGAAGACCTCGATTCTAATGGTA
GGGTCATTTGTGGCATGTCTAGTGCAGGCCCTTTTCAGCTGACGGCTTCCTTTGACAACTACTACAGCCT
GCTGATTGATGGGCCCCTGGACCGGGAGCAGATCAGTGAATACCAAGTCCTGATCACGGCCTCAGATAGT
GGCTCACCCCCACTTAGCACCCGAAGGACAATCACTGTGTCAGTTGCTGATGTGAATGACAATACACCAA
ACTTTCCTCAACCCCAGCAGGAACTTTTCGTTGCTGAAAACAATGGCCCTGGGGCCTCTCTAGGCCGAGT
GTTTGCCCAGGACCCCGACCTGGGGAAGAATGGCCTTGTCTCTTATGAGCTGTTGGATGTTATCTCTGAA
GGGCCATCAGCCTCTAGCTTGCTGGCAGTGGAATCATCCAGTGGGGCCATCACTGCCAAAACTTCCTTTG
ACTTTGAGCAGCTCAGGGGGTTTCATTTCCAAGTAGAAGGCCGGGATGGTGGCATTCCTCCCAGAAGTGC
AACAGTGACTATAAACTTGTTTGTGGTAGATAGGAATGACAATTATCCGGTTATCTTGTTTCCCTTGCCC
AGAAATGGTTCTGTCCCAGTGGAAATTGTGCCCCGCTCTGCCAGGACTGGACACTTGGTCACAAAAGTGG
TAGCAGAGGATGCTGACAGTGGTTCTAATGCCTGGCTTTCCTACCACATCTCCCGGGCGTCTGACTCTAG
TCTCTTTAGAATTTCAGCCAATATAGGTGAGCTCCGTACTGCTCGCTTAGTTCTTCCCACTGATGCAGTT
AAGCAGAGGGTGGTGGTAGTGGTTCGGGACCATGGAGACCCACCACTTTCCTCCTCTGTCACTCTGGGTG
TGCTGTTGAGCAACTCTGTCCCTCAGTTACTTCCAGACTTTGAAGATGTCTGGGAACCAGGAGGGCAGCT
TTCTGCCCAGAACTTGTATTTAGTAATTGCCTTGGCTTGTATTTCCTTTTTATTTCTGGGGTGCTTACTT
TTCTTCGTGTGTACCAAGTTGCACCAGAGCCCAGGCTGTTGCGCTCAGAGCTGCTGTCGCTCTACAGAGG
ATCTGAGGTATGGAAGTAAGATGGTTTCAAATCCTTGCATGACATCAGCCACCATAGATGTCACTACAGT
TGAGAGACTTTCTCAGACTTATCTCTATCGGGCCTCTCTGGGACTTGGTTCTGATAATAACAGTTTGCTG
TTGCGTGGGGAGTACAATGCTGCCGACCTGCGAAATCTTGCCACTGGGGTAGGACTGAATTTGCCAATAT
CCTGTATTCAGATTCGGAATAGGAAAGGGGATCACGCTAATGTCAATGCCATGCCACGACAGCCCAACCC
TGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATT
CTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGG
CAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACGGACCAGG
CAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATC
TCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGG
AGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCAC
GACTGACAACAGTGACCAGTGA

Translation (963 aa):
MVGCGVAVLCLWVSCGAAAGQLEYSVPEETERGVAVGNLSADLRLPAAAMSSRNFRFLSSHRELYFGVDL
PSGNLVVREPADREQLCRAKAACVLTYDLVLEDPLELHKIRIHVLDTNDNSPLFPAGDVQLHIPEFLTPG
ARFTLPNAQDDDEGSNGILSYSLSPSQHFRLDMGSRVDGSEYPELVLEKALDREQRATHLLVLTARDGGL
PARSGDAQVTIIVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQALDPDEGSNGEVQYSLSNSTQAEL
RHRFHVHPKSGEVQVAASLGPPETLLEAYIEARDEGVFGLASTAKLLVEVTDVNDHAPELDFLTLSNPVP
EDAAPGTVIALFSVKDEDLDSNGRVICGMSSAGPFQLTASFDNYYSLLIDGPLDREQISEYQVLITASDS
GSPPLSTRRTITVSVADVNDNTPNFPQPQQELFVAENNGPGASLGRVFAQDPDLGKNGLVSYELLDVISE
GPSASSLLAVESSSGAITAKTSFDFEQLRGFHFQVEGRDGGIPPRSATVTINLFVVDRNDNYPVILFPLP
RNGSVPVEIVPRSARTGHLVTKVVAEDADSGSNAWLSYHISRASDSSLFRISANIGELRTARLVLPTDAV
KQRVVVVVRDHGDPPLSSSVTLGVLLSNSVPQLLPDFEDVWEPGGQLSAQNLYLVIALACISFLFLGCLL
FFVCTKLHQSPGCCAQSCCRSTEDLRYGSKMVSNPCMTSATIDVTTVERLSQTYLYRASLGLGSDNNSLL
LRGEYNAADLRNLATGVGLNLPISCIQIRNRKGDHANVNAMPRQPNPDWRYSASLRAGMHSSVHLEEAGI
LRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAII
SIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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