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Report for CCDS4240.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4240.1 Public Homo sapiens 5 PCDHA13 24 110 108 CCDS HistoryNCBI Gene:56136Re-query CCDS DB by CCDS ID:4240.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4240.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289272.3 ENSP00000289272.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289272.3Link to Ensembl Protein Viewer:ENSP00000289272.2Re-query CCDS DB by Nucleotide ID:ENST00000289272Re-query CCDS DB by Protein ID:ENSP00000289272
Original member Current member NCBI NM_018904.3 NP_061727.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018904.3Link to Protein Sequence:NP_061727.1Re-query CCDS DB by Nucleotide ID:NM_018904Re-query CCDS DB by Protein ID:NP_061727Link to BLAST:NP_061727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061727.1 950 Q9Y5I0-1 950 100% 0 0

Chromosomal Locations for CCDS 4240.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140882269 140884662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140978949 140979007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140982475 140982563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141009627 141009937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2853 nt):
ATGCTGTCTTCCTGGCAAGGAGGCCCAAGACCGCGGCAACTACTGCTCTGGCTTCTGATCCTCGCAGCCT
GGGAGACGGGTAGTGGCCAGCTCCACTACTCCGTCCCCGAGGAAGCAAAACACGGCACCTTCGTGGGCCG
CATCGCTCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGA
CACGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGG
AGCTGTGTGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCTCTGCAGGTTTT
CCATGTGGAGGTGAAGGTGAGGGACATTAACGACAACCCGCCCATATTCCCTGAAAGCAAGAAACGAATA
ATCATTGCAGAATCTAGACCTCCGGAAACTCGATTTCCACTAGATGGCGCATCCGATGCAGATATTGGAG
TAAACTCGGCATTGACCTACCGACTGGATCCCAACGATTATTTCACTTTGGACGCACAAAACAGTCTTGA
GCAAATGTCTTCATTATCACTTGTACTGAGGAAAACACTGGACAGAGAGGAAATTCAGGAACATAGTTTA
TTACTGACAGCCAGTGATGGAGGTAAACCCGAGCTGACTGGCACAGTTCAGCTGCTCATCACGATTCTGG
ACGTGAATGACAACGCCCCGGAATTTTACCAATCCGTTTATAAAGTGACGGTGTTAGAGAACGCCTTCAA
TGGAACATTAGTGATCAAGCTAAATGCCACAGATCCTGATGATGGTACAAATGGAGATATAGTTTACTCA
TTTAGAAGGCCTGTATGGCCTGCAGTGGTATATGCATTTACCATAAATCCGAACAATGGAGAAATTAGGA
CAAAAGGCAAACTAGATTTCGAAGAAAAGAAATTATATGAAATATCCGTGGAGGCAGTTGACAAAGGAAA
TATTCCAATGGCGGGTCATTGTACCCTTTTGGTGGAAGTACTAGATGTAAATGATAACGCCCCAGAGGTT
ACCATCACTTCTTTGTCACTCCCCATCAGAGAAGACACTCAGCCTAGCGCCATTATTGCCCTAATCAGTG
TGTCCGATCGTGACTCTGGCTCAAATGGACAGGTCACCTGCACCTTGACGCCGCATGTCCCCTTCAAGCT
GGTGTCCACCTACAAGAACTACTACTCATTAGTGCTGGACAGCGCCCTGGACCGCGAGAGCGTATCAGCC
TATGAACTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACGGCCAGCGTGTCGGTGG
GGGTGGCCGACGTGAACGACAACGCGCCGGCGTTCGCGCAGCCCGAGTACACGGTGTTCGTGAAGGAAAA
CAATCCGCCGGGCTGCCACATCTTCACGGTGTCTGCTCAGGACGCGGACGCACAGGAGAACGCGCTGGTC
TCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGCGTGCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGA
GCGGCAAGGTGTACGCGCTGCAGCCGTTGGACCACGAGGAGCTGGAGCTGTTGCAGTTCCAGGTGAGCGC
GCGCGACTCTGGCGTGCCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGAC
AACGCTCCGGCGCTGCTGACGCCCGGGGCTGGCAGCGCGGGAGGCACAGTGAGCGAGCTGATGCCGCGGT
CGGTGGGTGCAGGCCACGTGGTGGCGAAGGTGCGCGCGGTGGACGCCGATTCGGGCTACAATGCGTGGCT
TTCGTATGAATTGCAGCTGGCGGCGGTCGGCGCGCGCATCCCGTTCCGCGTGGGGCTGTACACTGGCGAG
ATCAGCACGACGCGCCCTCTGGACGAGGTGGACGCGCCGCACCACCGCCTTCTGGTGCTGGTGAAGGACC
ACGGTGAGCCCGCGCTGACGGCCACGGCAACGGTGCTGTTGTCGCTGGTGGAGAGCGGCCAAGCGCCACA
GGCTTCGTCGAGGGCGTCGGCAGGCGCTGTGGGTCCAGAAGCGGCGCTGGTGGATGTCAATGTTTACTTG
ATCATTGCCATCTGCGCGGTGTCCAGCCTGTTGGTGCTCACGTTGCTGCTGTATACTGCGCTGCGGTGCT
CGGCACCGCCCACCGAGGGCGCGTGCGCGCCGGGCAAGCCCACTCTAGTGTGCTCCAGCGCGGCAGGGAG
TTGGTCGTACTCGCAGCAGAGGCGGCCGAGGGTGTGCTCTGGGGAGGGCCCGCATAAGACGGACCTCATG
GCCTTCAGTCCCAGCCTTCCTCCTTGTCTGGGTTCTGCAGAGGGAACAGGCCAGAGGGAGGAGGACTCAG
AATGCTTGAAAGAGCCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCA
CAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCA
ACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACA
GCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAA
ATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAA
AGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGA
CCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAGTGA

Translation (950 aa):
MLSSWQGGPRPRQLLLWLLILAAWETGSGQLHYSVPEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKR
HGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVKVRDINDNPPIFPESKKRI
IIAESRPPETRFPLDGASDADIGVNSALTYRLDPNDYFTLDAQNSLEQMSSLSLVLRKTLDREEIQEHSL
LLTASDGGKPELTGTVQLLITILDVNDNAPEFYQSVYKVTVLENAFNGTLVIKLNATDPDDGTNGDIVYS
FRRPVWPAVVYAFTINPNNGEIRTKGKLDFEEKKLYEISVEAVDKGNIPMAGHCTLLVEVLDVNDNAPEV
TITSLSLPIREDTQPSAIIALISVSDRDSGSNGQVTCTLTPHVPFKLVSTYKNYYSLVLDSALDRESVSA
YELVVTARDGGSPSLWATASVSVGVADVNDNAPAFAQPEYTVFVKENNPPGCHIFTVSAQDADAQENALV
SYSLVERRVGERALSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDSGVPPLGSNVTLQVFVLDEND
NAPALLTPGAGSAGGTVSELMPRSVGAGHVVAKVRAVDADSGYNAWLSYELQLAAVGARIPFRVGLYTGE
ISTTRPLDEVDAPHHRLLVLVKDHGEPALTATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYL
IIAICAVSSLLVLTLLLYTALRCSAPPTEGACAPGKPTLVCSSAAGSWSYSQQRRPRVCSGEGPHKTDLM
AFSPSLPPCLGSAEGTGQREEDSECLKEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWP
TVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDK
SDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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