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Report for CCDS35084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35084.1 Public Homo sapiens 9 RNF20 24 110 108 CCDS HistoryNCBI Gene:56254Re-query CCDS DB by CCDS ID:35084.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35084.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389120.8 ENSP00000373772.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389120.8Link to Ensembl Protein Viewer:ENSP00000373772.3Re-query CCDS DB by Nucleotide ID:ENST00000389120Re-query CCDS DB by Protein ID:ENSP00000373772
Original member Current member NCBI NM_019592.7 NP_062538.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019592.7Link to Protein Sequence:NP_062538.5Re-query CCDS DB by Nucleotide ID:NM_019592Re-query CCDS DB by Protein ID:NP_062538Link to BLAST:NP_062538.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062538.5 975 Q5VTR2 975 100% 0 0

Chromosomal Locations for CCDS 35084.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 101535424 101535552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101540203 101540370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101540490 101540637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101540793 101540975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101544767 101544885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101546820 101546966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101547137 101547214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101547399 101547518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101550606 101550785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101551684 101551819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101552141 101552262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101552383 101552753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101553988 101554105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101554694 101554843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101557384 101557596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101560801 101560926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101561090 101561230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101561910 101562011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 101562246 101562422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2928 nt):
ATGTCAGGAATTGGAAATAAAAGAGCAGCTGGAGAACCTGGCACCTCCATGCCTCCTGAGAAGAAGGCAG
CTGTTGAAGATTCAGGGACCACAGTGGAAACAATTAAGCTAGGAGGTGTCTCTTCAACGGAGGAACTAGA
CATTAGAACACTGCAAACCAAAAATCGCAAGCTGGCAGAAATGTTGGATCAGCGGCAGGCCATTGAAGAT
GAACTTCGTGAGCACATTGAAAAACTGGAACGACGACAGGCCACTGATGATGCCTCACTATTGATTGTCA
ACCGATACTGGAGTCAGTTTGATGAAAACATCCGTATCATCCTTAAACGTTATGATCTGGAGCAGGGCTT
GGGAGACCTACTCACAGAACGAAAAGCCCTTGTTGTGCCTGAACCAGAACCAGACTCTGATAGCAATCAG
GAGCGTAAAGATGACCGAGAGAGAGGGGAAGGGCAAGAGCCAGCTTTCTCTTTCCTTGCTACTTTGGCCA
GCAGTTCCAGTGAAGAGATGGAGTCTCAGCTGCAGGAACGTGTGGAGTCTTCCCGCCGAGCCGTGTCCCA
GATTGTGACTGTTTATGATAAATTGCAAGAAAAAGTGGAGCTCTTATCCCGGAAGCTAAACAGTGGAGAT
AATCTGATAGTGGAGGAAGCAGTGCAGGAGCTGAACTCTTTCCTCGCACAGGAGAATATGAGGCTACAGG
AATTGACAGATCTTCTTCAGGAAAAGCATCGCACCATGTCTCAGGAGTTCTCCAAGTTGCAGAGTAAAGT
GGAGACAGCCGAATCACGAGTGTCTGTCCTGGAGTCCATGATTGATGACCTGCAGTGGGATATTGACAAA
ATTCGAAAGAGGGAACAGCGACTCAACCGACACTTAGCAGAAGTCCTAGAACGGGTGAATTCCAAAGGTT
ATAAGGTGTATGGAGCGGGGAGCAGTCTGTATGGCGGCACAATCACTATCAATGCTCGGAAGTTTGAGGA
AATGAATGCAGAGCTTGAGGAGAACAAAGAGTTGGCTCAGAACCGTCTCTGTGAGCTGGAGAAACTTCGG
CAAGACTTTGAGGAGGTCACTACACAAAATGAAAAGCTGAAGGTGGAATTGCGGAGTGCAGTGGAGCAAG
TCGTTAAGGAAACTCCAGAATATCGCTGCATGCAGTCACAGTTCTCCGTCTTGTATAATGAGAGCCTACA
GTTGAAAGCACACTTGGATGAGGCTCGGACCCTGCTTCATGGCACCAGAGGAACCCACCAGCACCAGGTT
GAGCTTATTGAGCGAGATGAGGTTAGTCTTCATAAGAAGCTGAGGACTGAAGTAATTCAGCTAGAAGATA
CATTGGCCCAGGTCCGCAAGGAGTATGAAATGCTGAGGATAGAATTTGAGCAGACCCTTGCTGCCAATGA
ACAAGCAGGCCCTATAAACAGGGAGATGCGCCACCTCATCAGTAGCCTCCAGAATCACAATCACCAGCTG
AAAGGGGAGGTCCTGAGATATAAGCGGAAATTGAGAGAAGCCCAGTCTGACCTGAACAAGACACGCCTGC
GTAGTGGTAGTGCCCTCCTGCAGTCCCAGTCTAGTACTGAGGACCCGAAGGATGAGCCTGCGGAGCTAAA
ACCAGATTCTGAGGACTTATCCTCCCAGTCCTCAGCTTCAAAGGCATCTCAGGAGGATGCCAATGAAATC
AAGTCTAAACGGGATGAAGAAGAACGAGAACGAGAAAGGAGGGAGAAGGAGAGGGAACGAGAAAGAGAAC
GGGAGAAGGAGAAGGAGAGAGAACGAGAGAAGCAGAAGCTAAAAGAGTCAGAAAAAGAGAGAGATTCTGC
TAAGGATAAAGAGAAAGGCAAACATGATGATGGACGGAAAAAGGAAGCAGAAATTATCAAACAATTGAAG
ATTGAACTCAAGAAGGCACAGGAGAGCCAAAAGGAGATGAAACTATTGCTGGATATGTACCGTTCTGCCC
CAAAGGAACAGAGAGACAAAGTTCAGCTGATGGCAGCTGAGAAGAAGTCTAAGGCAGAGTTGGAAGATCT
AAGGCAAAGACTCAAGGATCTGGAAGATAAAGAGAAGAAAGAGAACAAGAAAATGGCTGATGAGGATGCC
TTGAGGAAGATCCGGGCAGTGGAGGAGCAGATAGAATACCTACAGAAGAAGCTAGCCATGGCCAAGCAGG
AAGAAGAAGCACTCCTCTCTGAAATGGATGTCACAGGCCAGGCCTTTGAAGACATGCAGGAGCAAAATAT
CCGTTTGATGCAGCAATTGCGGGAGAAGGATGATGCAAATTTCAAGCTCATGTCAGAGCGTATCAAGTCC
AATCAGATCCATAAGTTGCTTAAAGAAGAGAAGGAGGAGCTGGCAGACCAGGTGTTGACTCTGAAGACTC
AGGTTGATGCCCAGCTACAGGTAGTAAGGAAACTGGAAGAGAAGGAGCATCTGTTACAGAGCAACATTGG
CACAGGGGAGAAAGAGCTGGGTCTTAGGACCCAAGCCTTAGAGATGAATAAACGCAAGGCAATGGAGGCA
GCCCAGCTTGCAGATGACCTCAAAGCACAACTGGAGTTGGCTCAGAAGAAGCTACATGATTTTCAGGATG
AGATCGTGGAGAACAGTGTTACCAAAGAAAAGGACATGTTCAATTTCAAACGAGCCCAGGAGGACATCTC
TAGACTTCGCAGGAAGCTGGAGACCACAAAGAAACCAGACAATGTACCCAAGTGTGATGAGATTCTGATG
GAAGAGATTAAGGATTACAAGGCACGCTTGACCTGTCCGTGCTGTAACATGCGTAAAAAGGATGCTGTTC
TTACTAAGTGTTTTCATGTCTTCTGCTTTGAGTGTGTGAAGACACGCTATGACACCCGCCAGCGCAAATG
TCCCAAGTGTAATGCTGCTTTTGGTGCCAATGATTTTCATCGCATCTACATTGGTTGA

Translation (975 aa):
MSGIGNKRAAGEPGTSMPPEKKAAVEDSGTTVETIKLGGVSSTEELDIRTLQTKNRKLAEMLDQRQAIED
ELREHIEKLERRQATDDASLLIVNRYWSQFDENIRIILKRYDLEQGLGDLLTERKALVVPEPEPDSDSNQ
ERKDDRERGEGQEPAFSFLATLASSSSEEMESQLQERVESSRRAVSQIVTVYDKLQEKVELLSRKLNSGD
NLIVEEAVQELNSFLAQENMRLQELTDLLQEKHRTMSQEFSKLQSKVETAESRVSVLESMIDDLQWDIDK
IRKREQRLNRHLAEVLERVNSKGYKVYGAGSSLYGGTITINARKFEEMNAELEENKELAQNRLCELEKLR
QDFEEVTTQNEKLKVELRSAVEQVVKETPEYRCMQSQFSVLYNESLQLKAHLDEARTLLHGTRGTHQHQV
ELIERDEVSLHKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQTLAANEQAGPINREMRHLISSLQNHNHQL
KGEVLRYKRKLREAQSDLNKTRLRSGSALLQSQSSTEDPKDEPAELKPDSEDLSSQSSASKASQEDANEI
KSKRDEEERERERREKEREREREREKEKEREREKQKLKESEKERDSAKDKEKGKHDDGRKKEAEIIKQLK
IELKKAQESQKEMKLLLDMYRSAPKEQRDKVQLMAAEKKSKAELEDLRQRLKDLEDKEKKENKKMADEDA
LRKIRAVEEQIEYLQKKLAMAKQEEEALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKLMSERIKS
NQIHKLLKEEKEELADQVLTLKTQVDAQLQVVRKLEEKEHLLQSNIGTGEKELGLRTQALEMNKRKAMEA
AQLADDLKAQLELAQKKLHDFQDEIVENSVTKEKDMFNFKRAQEDISRLRRKLETTKKPDNVPKCDEILM
EEIKDYKARLTCPCCNMRKKDAVLTKCFHVFCFECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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