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Report for CCDS16037.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16037.1 Public Mus musculus 2 Stam2 23 108 98 CCDS HistoryNCBI Gene:56324Re-query CCDS DB by CCDS ID:16037.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16037.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102759.7 ENSMUSP00000099820.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102759.7Link to Ensembl Protein Viewer:ENSMUSP00000099820.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102759Re-query CCDS DB by Protein ID:ENSMUSP00000099820
Original member NCBI NM_019667.2 NP_062641.1 Updated not alive Link to Nucleotide Sequence:NM_019667.2Link to Protein Sequence:NP_062641.1Re-query CCDS DB by Nucleotide ID:NM_019667Re-query CCDS DB by Protein ID:NP_062641
Current member NCBI NM_019667.3 NP_062641.1 Accepted alive Link to Nucleotide Sequence:NM_019667.3Link to Protein Sequence:NP_062641.1Re-query CCDS DB by Nucleotide ID:NM_019667Re-query CCDS DB by Protein ID:NP_062641Link to BLAST:NP_062641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062641.1 523 O88811-1 523 100% 0 0

Chromosomal Locations for CCDS 16037.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 52694709 52694937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52700005 52700171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52703102 52703252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52706399 52706453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52707918 52708005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52708143 52708225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52709596 52709690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52714818 52715004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52715688 52715757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52716425 52716571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52719697 52719795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52719902 52719977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52720884 52720968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52742061 52742100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGCCTCTGTTCACTGCCAACCCGTTCGAGCAAGATGTGGAAAAAGCCACAAATGAGTACAACACCACAG
AAGACTGGAGTCTGATCATGGACATCTGTGACAGGGTTGGAAGCACTCCCAGTGGAGCAAAAGATTGCCT
AAAAGCCATAATGAAAAGGGTAAACCATAAGGTCCCTCACGTTGCTCTGCAGGCATTGACCCTTCTTGGA
GCTTGTGTGGCAAACTGTGGAAAGATATTTCATTTAGAAGTATGTTCCCGTGATTTTGCAACGGAAGTAC
GTTCTGTGATAAAAAATAAGGCTCATCCTAAAGTATGTGAAAAACTAAAATCTCTAATGGTGGAATGGTC
AGAAGAATTCCAGAAGGACCCCCAATTTAGTCTGATATCTGCAACTATTAAGTCTATGAAAGAAGAAGGG
GTTACTTTTCCTTCCGCAGGCTCCCAGACTGTCGCGGCTGCTGCCAAAAACGGGACATCATTGAACAAAA
ACAAAGAAGATGAGGACATAGCTAAAGCTATTGAGTTATCGTTGCAAGAGCAGAAGCAGCAGTACACGGA
GACAAAGGCTTTGTACCCACCCGCAGAGAGTCAGCTCAATAACAAGGCTGCACGGAGAGTCAGAGCTTTA
TACGACTTTGAAGCTGTTGAGGACAACGAGCTCACCTTTAAACATGGTGAGCTCATTACTGTTTTGGATG
ACAGTGACGCCAACTGGTGGCAAGGAGAAAATCACAGAGGAACAGGACTCTTCCCCTCCAACTTTGTAAC
GACTGACTTAAGCACAGAGGTTGAGACAGCAACGGTGGACAAATTGAATGTAATTGATGATGATGTGGAG
GAAATTAAGAAATCAGAACCTGAGCCTGTTTATATAGATGAGGGTAAAATGGATAGAGCCCTGCAGATTC
TCCAGAGCATAGATCCAAAAGAGTCAAAACCCGACTCCCAAGACCTCTTGGACTTGGAAGATGTTTGCCA
ACAGATGGGTCCGATGATAGATGAAAAACTTGAAGAGATTGATAGGAAGCATTCAGAACTGTCTGAGTTG
AACGTAAAGGTGCTGGAAGCCCTGGACCTGTACAATAAGTTGGTGAATGAAGCGCCTGTGTACTCGGTCT
ATTCAAAGCTGCATCCCGCACATTACCCACCCGCAGCAGCTGGGGTTCCAGTGCAGACATATCCAGTCCA
GTCGCATGGTGGAAACTACCTGGGCCACGGCATTCACCAAGTATCTGTTGCCCAGAACTATAACCTAGGA
CCTGATCCTATGGGCTCGCTGAGATCTCTGCCTCCAAATATGAACTCGGTAACAGCACACACCGTCCAAC
CTCCATACTTAAGCACTGGACAGGACACTGTCTCCAACCCTTCTTACATGAACCAGAGCTCTCGTCTTCA
GGCAGCTGCTGGTACAGCTGCTTACACACAGCCTGTGGGGATGTCTACAGATGTGTCTTCTTTCCAGAAC
ACAGCATCCGGTTTGCCTCAGCTGGCTGGCTTTCCAGTGGCAGTTCCTGCACCTGTCGCTGCACAGCCAC
AAGCAAGCTACCACCAGCAGCCTCTCCTGTAG

Translation (523 aa):
MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDRVGSTPSGAKDCLKAIMKRVNHKVPHVALQALTLLG
ACVANCGKIFHLEVCSRDFATEVRSVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEG
VTFPSAGSQTVAAAAKNGTSLNKNKEDEDIAKAIELSLQEQKQQYTETKALYPPAESQLNNKAARRVRAL
YDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDLSTEVETATVDKLNVIDDDVE
EIKKSEPEPVYIDEGKMDRALQILQSIDPKESKPDSQDLLDLEDVCQQMGPMIDEKLEEIDRKHSELSEL
NVKVLEALDLYNKLVNEAPVYSVYSKLHPAHYPPAAAGVPVQTYPVQSHGGNYLGHGIHQVSVAQNYNLG
PDPMGSLRSLPPNMNSVTAHTVQPPYLSTGQDTVSNPSYMNQSSRLQAAAGTAAYTQPVGMSTDVSSFQN
TASGLPQLAGFPVAVPAPVAAQPQASYHQQPLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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