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Report for CCDS20113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20113.1 Public Mus musculus 6 Gimap1 23 108 98 CCDS HistoryNCBI Gene:16205Re-query CCDS DB by CCDS ID:20113.1Re-query CCDS DB by GeneID:16205See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20113.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054368.6 ENSMUSP00000062108.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054368.6Link to Ensembl Protein Viewer:ENSMUSP00000062108.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000054368Re-query CCDS DB by Protein ID:ENSMUSP00000062108
Original member Current member EBI ENSMUST00000204168.1 ENSMUSP00000145479.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204168.1Link to Ensembl Protein Viewer:ENSMUSP00000145479.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204168Re-query CCDS DB by Protein ID:ENSMUSP00000145479
Original member Current member NCBI NM_008376.3 NP_032402.2 Accepted alive Link to Nucleotide Sequence:NM_008376.3Link to Protein Sequence:NP_032402.2Re-query CCDS DB by Nucleotide ID:NM_008376Re-query CCDS DB by Protein ID:NP_032402Link to BLAST:NP_032402.2
Original member Current member NCBI NM_175860.2 NP_787056.1 Accepted alive Link to Nucleotide Sequence:NM_175860.2Link to Protein Sequence:NP_787056.1Re-query CCDS DB by Nucleotide ID:NM_175860Re-query CCDS DB by Protein ID:NP_787056Link to BLAST:NP_787056.1

Chromosomal Locations for CCDS 20113.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48741375 48741417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48742499 48743358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGGAGGAAGGAAGATGGCAAGAGATGAGGAAGACGCCTATGGCTCAGAGGACTCCAGGGCCCCGCAGA
TGCCCCAGCTGAGGCTCATCCTAGTGGGCAGGACTGGGACCGGCAAGAGTGCCACTGGCAACAGCATCCT
GGGTCAGAAGTGCTTCCTGTCCAGGCTGGGGGCGGTGCCTGTCACCAGAAGTTGCACTTTGGCCAGCAGA
ATGTGGGCCGGCTGGCAGGTGGAGGTGGTGGACACCCCGGATATCTTCAGCTCCGAGATCCCGCGGACCG
ACCCTGGGTGCGTGGAGACAGCCCGCTGCTTTGTGCTGTCGGCCCCTGGGCCGCACGCGCTGCTGCTGGT
CACCCAGCTGGGTCGCTTCACCATGCAGGACAGCCAGGCGCTGGCCGCGGTGAAGCGGTTATTCGGGAAG
CAGGTGATGGCGCGCACTGTCGTGGTGTTCACGCGCCAAGAGGACCTGGCTGGAGACTCCCTGCAGGATT
ATGTGCACTGCACGGACAACCGCGCGCTGCGGGACCTGGTGGCCGAGTGCGGGGGCCGCGTGTGCGCCCT
CAACAACCGCGCCACAGGCAGCGAGCGCGAGGCTCAGGCTGAGCAGCTGCTGGGCATGGTTGCGTGCTTG
GTGAGGGAGCACGGGGGCGCGCACTACTCCAATGAGGTGTATGAGCTGGTGCAGGACACGCGGTGCGCTG
ACCCCCAGGACCAAGTAGCCAAGGTGGCAGAGATAGTGGCTGAGCGCATGCAGAGGCGCACCAGGTTGCT
AGCTGGGCTGTGGGGATGGCGGAAATTCTACTGGAAGGGCTGGAGGCGTGGTTTCTCTGTCTTCCTGGGT
GTGGCCATCTTGATCTACCTGCTGTTCTACAGAAAGGGCTTTGGGGACCAGAATAACAGATAA

Translation (300 aa):
MGGRKMARDEEDAYGSEDSRAPQMPQLRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASR
MWAGWQVEVVDTPDIFSSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVKRLFGK
QVMARTVVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNNRATGSEREAQAEQLLGMVACL
VREHGGAHYSNEVYELVQDTRCADPQDQVAKVAEIVAERMQRRTRLLAGLWGWRKFYWKGWRRGFSVFLG
VAILIYLLFYRKGFGDQNNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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