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Report for CCDS10113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10113.1 Public Homo sapiens 15 B2M 24 110 108 CCDS HistoryNCBI Gene:567Re-query CCDS DB by CCDS ID:10113.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10113.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000561424.5 ENSP00000453191.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000561424.5Link to Ensembl Protein Viewer:ENSP00000453191.1Re-query CCDS DB by Nucleotide ID:ENST00000561424Re-query CCDS DB by Protein ID:ENSP00000453191
Original member Current member EBI ENST00000559916.1 ENSP00000453350.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000559916.1Link to Ensembl Protein Viewer:ENSP00000453350.1Re-query CCDS DB by Nucleotide ID:ENST00000559916Re-query CCDS DB by Protein ID:ENSP00000453350
Original member Current member EBI ENST00000648006.3 ENSP00000497910.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000648006.3Link to Ensembl Protein Viewer:ENSP00000497910.1Re-query CCDS DB by Nucleotide ID:ENST00000648006Re-query CCDS DB by Protein ID:ENSP00000497910
Original member Current member NCBI NM_004048.4 NP_004039.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004048.4Link to Protein Sequence:NP_004039.1Re-query CCDS DB by Nucleotide ID:NM_004048Re-query CCDS DB by Protein ID:NP_004039Link to BLAST:NP_004039.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004039.1 119 P61769 119 100% 0 0

Chromosomal Locations for CCDS 10113.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 44711547 44711613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44715423 44715701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44716329 44716342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (360 nt):
ATGTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTA
CTCCAAAGATTCAGGTTTACTCACGTCATCCAGCAGAGAATGGAAAGTCAAATTTCCTGAATTGCTATGT
GTCTGGGTTTCATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAG
CATTCAGACTTGTCTTTCAGCAAGGACTGGTCTTTCTATCTCTTGTACTACACTGAATTCACCCCCACTG
AAAAAGATGAGTATGCCTGCCGTGTGAACCATGTGACTTTGTCACAGCCCAAGATAGTTAAGTGGGATCG
AGACATGTAA

Translation (119 aa):
MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVE
HSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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