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Report for CCDS45772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45772.1 Public Homo sapiens 17 JPT1 24 110 108 CCDS HistoryNCBI Gene:51155Re-query CCDS DB by CCDS ID:45772.1Re-query CCDS DB by GeneID:51155See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45772.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000481647.5 ENSP00000462478.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000481647.5Link to Ensembl Protein Viewer:ENSP00000462478.1Re-query CCDS DB by Nucleotide ID:ENST00000481647Re-query CCDS DB by Protein ID:ENSP00000462478
Original member Current member EBI ENST00000470924.5 ENSP00000462784.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000470924.5Link to Ensembl Protein Viewer:ENSP00000462784.1Re-query CCDS DB by Nucleotide ID:ENST00000470924Re-query CCDS DB by Protein ID:ENSP00000462784
Original member Current member EBI ENST00000482348.5 ENSP00000462834.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482348.5Link to Ensembl Protein Viewer:ENSP00000462834.1Re-query CCDS DB by Nucleotide ID:ENST00000482348Re-query CCDS DB by Protein ID:ENSP00000462834
Original member Current member EBI ENST00000476258.5 ENSP00000464266.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000476258.5Link to Ensembl Protein Viewer:ENSP00000464266.1Re-query CCDS DB by Nucleotide ID:ENST00000476258Re-query CCDS DB by Protein ID:ENSP00000464266
Original member Current member NCBI NM_001002033.3 NP_001002033.1 Accepted alive Link to Nucleotide Sequence:NM_001002033.3Link to Protein Sequence:NP_001002033.1Re-query CCDS DB by Nucleotide ID:NM_001002033Re-query CCDS DB by Protein ID:NP_001002033Link to BLAST:NP_001002033.1
Original member Current member NCBI NM_001288609.1 NP_001275538.1 Accepted alive Link to Nucleotide Sequence:NM_001288609.1Link to Protein Sequence:NP_001275538.1Re-query CCDS DB by Nucleotide ID:NM_001288609Re-query CCDS DB by Protein ID:NP_001275538Link to BLAST:NP_001275538.1
Original member Current member NCBI NM_001288610.1 NP_001275539.1 Accepted alive Link to Nucleotide Sequence:NM_001288610.1Link to Protein Sequence:NP_001275539.1Re-query CCDS DB by Nucleotide ID:NM_001288610Re-query CCDS DB by Protein ID:NP_001275539Link to BLAST:NP_001275539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002033.1 108 Q9UK76-3 108 100% 0 0
NP_001275538.1 108 Q9UK76-3 108 100% 0 0
NP_001275539.1 108 Q9UK76-3 108 100% 0 0

Chromosomal Locations for CCDS 45772.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75136102 75136250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75146666 75146684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75147556 75147653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75148529 75148589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGGCCTCTAATATCTTTGGGACACCTGAAGAAAATCAAGCTTCTTGGGCCAAGTCAGCAGGTGCCAAGT
CTAGTGGTGGCAGGGAAGACTTGGAGTCATCTGGACTGCAGAGAAGGAACTCCTCTGAAGCAAGCTCCGG
AGACTTCTTAGATCTGAAGGGAGAAGGTGATATTCATGAAAATGTGGACACAGACTTGCCAGGCAGCCTG
GGGCAGAGTGAAGAGAAGCCCGTGCCTGCTGCGCCTGTGCCCAGCCCGGTGGCCCCGGCCCCAGTGCCAT
CCAGAAGAAATCCCCCTGGCGGCAAGTCCAGCCTCGTCTTGGGTTAG

Translation (108 aa):
MASNIFGTPEENQASWAKSAGAKSSGGREDLESSGLQRRNSSEASSGDFLDLKGEGDIHENVDTDLPGSL
GQSEEKPVPAAPVPSPVAPAPVPSRRNPPGGKSSLVLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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