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Report for CCDS45637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45637.1 Public Homo sapiens 17 FAM222B 24 110 108 CCDS HistoryNCBI Gene:55731Re-query CCDS DB by CCDS ID:45637.1Re-query CCDS DB by GeneID:55731See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45637.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452648.8 ENSP00000413645.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452648.8Link to Ensembl Protein Viewer:ENSP00000413645.3Re-query CCDS DB by Nucleotide ID:ENST00000452648Re-query CCDS DB by Protein ID:ENSP00000413645
Original member Current member EBI ENST00000581407.6 ENSP00000462419.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000581407.6Link to Ensembl Protein Viewer:ENSP00000462419.1Re-query CCDS DB by Nucleotide ID:ENST00000581407Re-query CCDS DB by Protein ID:ENSP00000462419
Original member Current member EBI ENST00000583307.6 ENSP00000463296.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000583307.6Link to Ensembl Protein Viewer:ENSP00000463296.2Re-query CCDS DB by Nucleotide ID:ENST00000583307Re-query CCDS DB by Protein ID:ENSP00000463296
Original member Current member EBI ENST00000577513.6 ENSP00000463642.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000577513.6Link to Ensembl Protein Viewer:ENSP00000463642.2Re-query CCDS DB by Nucleotide ID:ENST00000577513Re-query CCDS DB by Protein ID:ENSP00000463642
Original member Current member EBI ENST00000581229.6 ENSP00000464299.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000581229.6Link to Ensembl Protein Viewer:ENSP00000464299.2Re-query CCDS DB by Nucleotide ID:ENST00000581229Re-query CCDS DB by Protein ID:ENSP00000464299
Original member Current member EBI ENST00000577376.6 ENSP00000464355.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000577376.6Link to Ensembl Protein Viewer:ENSP00000464355.2Re-query CCDS DB by Nucleotide ID:ENST00000577376Re-query CCDS DB by Protein ID:ENSP00000464355
Original member Current member NCBI NM_001077498.3 NP_001070966.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001077498.3Link to Protein Sequence:NP_001070966.1Re-query CCDS DB by Nucleotide ID:NM_001077498Re-query CCDS DB by Protein ID:NP_001070966Link to BLAST:NP_001070966.1
Original member Current member NCBI NM_001288632.2 NP_001275561.1 Accepted alive Link to Nucleotide Sequence:NM_001288632.2Link to Protein Sequence:NP_001275561.1Re-query CCDS DB by Nucleotide ID:NM_001288632Re-query CCDS DB by Protein ID:NP_001275561Link to BLAST:NP_001275561.1
Original member Current member NCBI NM_001288633.2 NP_001275562.1 Accepted alive Link to Nucleotide Sequence:NM_001288633.2Link to Protein Sequence:NP_001275562.1Re-query CCDS DB by Nucleotide ID:NM_001288633Re-query CCDS DB by Protein ID:NP_001275562Link to BLAST:NP_001275562.1
Original member Current member NCBI NM_001288634.2 NP_001275563.1 Accepted alive Link to Nucleotide Sequence:NM_001288634.2Link to Protein Sequence:NP_001275563.1Re-query CCDS DB by Nucleotide ID:NM_001288634Re-query CCDS DB by Protein ID:NP_001275563Link to BLAST:NP_001275563.1
Original member Current member NCBI NM_001288635.2 NP_001275564.1 Accepted alive Link to Nucleotide Sequence:NM_001288635.2Link to Protein Sequence:NP_001275564.1Re-query CCDS DB by Nucleotide ID:NM_001288635Re-query CCDS DB by Protein ID:NP_001275564Link to BLAST:NP_001275564.1
Original member Current member NCBI NM_018182.4 NP_060652.2 Accepted alive Link to Nucleotide Sequence:NM_018182.4Link to Protein Sequence:NP_060652.2Re-query CCDS DB by Nucleotide ID:NM_018182Re-query CCDS DB by Protein ID:NP_060652Link to BLAST:NP_060652.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070966.1 562 Q8WU58 562 100% 0 0
NP_001275561.1 562 Q8WU58 562 100% 0 0
NP_001275562.1 562 Q8WU58 562 100% 0 0
NP_001275563.1 562 Q8WU58 562 100% 0 0
NP_001275564.1 562 Q8WU58 562 100% 0 0
NP_060652.2 562 Q8WU58 562 100% 0 0

Chromosomal Locations for CCDS 45637.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28758270 28759876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28766586 28766667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGCTAGCCTGTCTACCAGGGCCAGGTGACCTGTCCTTTCAGCTTCTTTCTCACACGCAGATGAACACTG
GACTTCAGAAATGGGACACTACACAGAAAATGAGAACTGCTCACTATCCTACCCCAGCCGAATTGGATGC
GTATGCTAAGAAGGTCGCAAACAACCCACTGACTATAAAAATCTTCCCCAACAGTGTGAAGGTTCCCCAG
CGGAAACACGTTCGTCGTACTGTGAACGGCCTCGACACATCAGCCCAGCGCTACAGCCCCTACCCGACAC
AGGCTGCCACCAAGGCAGGCCTGCTTGCCATTGTCAAAGTGCCAGCCAAAAGCATACTCAAGGACTTTGA
CGGCACCCGAGCCCGGTTGCTCCCTGAGGCCATCATGAACCCCCCAGTGGCACCCTATGCTACTGTGGCA
CCCAGCACTTTAGCCCACCCCCAGGCCCAGGCTCTGGCCCGCCAGCAGGCCCTGCAGCATGCACAGACCC
TGGCCCATGCCCCTCCCCAGACGCTGCAGCACCCTCAGGGTATCCCGCCACCCCAGGCACTGTCCCACCC
TCAGAGCCTCCAGCAGCCTCAGGGCCTGGGCCACCCTCAGCCCATGGCCCAAACCCAGGGCTTGGTCCAC
CCTCAGGCCCTGGCTCACCAGGGTCTCCAGCACCCCCACAATCCCTTGCTGCATGGAGGCCGGAAGATGC
CAGACTCAGATGCCCCCCCGAATGTGACCGTGTCTACCTCAACTATCCCCCTTTCAATGGCGGCCACTCT
GCAGCACAGCCAGCCTCCGGACCTGAGTAGCATCGTGCACCAGATCAACCAGTTTTGCCAGACGAGGGCA
GGCATCAGCACTACCTCAGTGTGTGAGGGCCAGATCGCCAACCCCAGCCCCATTAGTCGCAGTCTGCTCA
TCAATGCAAGCACCCGGGTGTCGACCCACAGCGTCCCCACACCAATGCCTTCATGTGTGGTCAATCCCAT
GGAGCACACCCACGCGGCCACCGCCGCGTTGCCTGCTGCAGGTCCTGTCAACCTGCCCACAGGCATCTCT
CGCGTCCCCACTGGCTACCCTAGCGACCTCAAGCCAGTCACCTGGAACCAGCACCAGCTGGCCCACCTAC
AGCAGATGTGCAGCGAGGCTAGTGGGACGCCAGCCCCTGGCCTGACAGGCAAGCATGCGGCAGGACGCGA
GTTGGCAGGGCCTGGCTTTGTGGGCAAGGCCCCTGCCTACCCGCAGGAACTCTGCCTGGCGCAGTCCTTC
CATCTGAAGCCACCCCTGGAAAAGCCGACCCCATCCCCACCAGTCAACGGCATGGCAGCCCCATTGGCCT
ACCCCAATGGTCACTACTTCCAACCCCTGTGGAACAACATTCTGCCCACTCCCAATAGCGACAGCTCGGG
GTCTCAGGACCTTGCCATGCCGTTCCACGGTGGGCAGCCCACAGGTGCACCCCTCGACTGTGCGGCAGCT
CCCGGGGCCCACTACCGAGCAGGGACCGGGGGCGGTCCAGTGGCAAGCCAGAACAGCTTGATGCAAACAG
TGGATTACCTAAGTGGGGATTTCCAACAGGCCTGCTTCCGAGAACAGAGCCTGGCCATGCTGAGCAAGGC
CCACCGAGCCCCTGGCAACCGAGCCCCCGATCCCACAGAGAGTCGAAGTCTTCATATTCAGCACCCAGGG
TATAGATAG

Translation (562 aa):
MLACLPGPGDLSFQLLSHTQMNTGLQKWDTTQKMRTAHYPTPAELDAYAKKVANNPLTIKIFPNSVKVPQ
RKHVRRTVNGLDTSAQRYSPYPTQAATKAGLLAIVKVPAKSILKDFDGTRARLLPEAIMNPPVAPYATVA
PSTLAHPQAQALARQQALQHAQTLAHAPPQTLQHPQGIPPPQALSHPQSLQQPQGLGHPQPMAQTQGLVH
PQALAHQGLQHPHNPLLHGGRKMPDSDAPPNVTVSTSTIPLSMAATLQHSQPPDLSSIVHQINQFCQTRA
GISTTSVCEGQIANPSPISRSLLINASTRVSTHSVPTPMPSCVVNPMEHTHAATAALPAAGPVNLPTGIS
RVPTGYPSDLKPVTWNQHQLAHLQQMCSEASGTPAPGLTGKHAAGRELAGPGFVGKAPAYPQELCLAQSF
HLKPPLEKPTPSPPVNGMAAPLAYPNGHYFQPLWNNILPTPNSDSSGSQDLAMPFHGGQPTGAPLDCAAA
PGAHYRAGTGGGPVASQNSLMQTVDYLSGDFQQACFREQSLAMLSKAHRAPGNRAPDPTESRSLHIQHPG
YR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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