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Report for CCDS10490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10490.1 Public Homo sapiens 16 HCFC1R1 24 110 108 CCDS HistoryNCBI Gene:54985Re-query CCDS DB by CCDS ID:10490.1Re-query CCDS DB by GeneID:54985See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10490.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248089.8 ENSP00000248089.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000248089.8Link to Ensembl Protein Viewer:ENSP00000248089.4Re-query CCDS DB by Nucleotide ID:ENST00000248089Re-query CCDS DB by Protein ID:ENSP00000248089
Original member Current member EBI ENST00000574980.5 ENSP00000460639.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574980.5Link to Ensembl Protein Viewer:ENSP00000460639.1Re-query CCDS DB by Nucleotide ID:ENST00000574980Re-query CCDS DB by Protein ID:ENSP00000460639
Original member Current member NCBI NM_001002018.2 NP_001002018.1 Accepted alive Link to Nucleotide Sequence:NM_001002018.2Link to Protein Sequence:NP_001002018.1Re-query CCDS DB by Nucleotide ID:NM_001002018Re-query CCDS DB by Protein ID:NP_001002018Link to BLAST:NP_001002018.1
Original member Current member NCBI NM_001288665.1 NP_001275594.1 Accepted alive Link to Nucleotide Sequence:NM_001288665.1Link to Protein Sequence:NP_001275594.1Re-query CCDS DB by Nucleotide ID:NM_001288665Re-query CCDS DB by Protein ID:NP_001275594Link to BLAST:NP_001275594.1
Original member Current member NCBI NM_017885.4 NP_060355.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017885.4Link to Protein Sequence:NP_060355.1Re-query CCDS DB by Nucleotide ID:NM_017885Re-query CCDS DB by Protein ID:NP_060355Link to BLAST:NP_060355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002018.1 138 Q9NWW0-1 138 100% 0 0
NP_001275594.1 138 Q9NWW0-1 138 100% 0 0
NP_060355.1 138 Q9NWW0-1 138 100% 0 0

Chromosomal Locations for CCDS 10490.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3022863 3022998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3023233 3023361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3023474 3023530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3023847 3023941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (417 nt):
ATGATCCTGCAGCAGCCCTTGCAGCGAGGCCCCCAGGGAGGGGCCCAGCGCCTCCCGCGGGCCGCCTTGG
GGGTGACTTGGGGCCTGGACGCCAGCTCCCCTCTCCGAGGAGCTGTGCCCATGAGCACCAAGCGGCGCCT
GGAGGAGGAGCAGGAGCCTCTGCGCAAGCAGTTTCTGTCTGAGGAGAACATGGCCACCCACTTCTCTCAA
CTCAGCCTGCACAATGACCACCCCTACTGCAGCCCCCCCATGACCTTCTCCCCAGCCCTGCCCCCACTCA
GGAGCCCTTGCTCTGAGCTGCTTCTCTGGCGCTATCCTGGCAGCCTCATCCCTGAGGCCCTCCGTCTGCT
GAGGCTGGGGGACACCCCCAGTCCCCCCTACCCTGCAACCCCAGCTGGGGACATAATGGAGCTCTGA

Translation (138 aa):
MILQQPLQRGPQGGAQRLPRAALGVTWGLDASSPLRGAVPMSTKRRLEEEQEPLRKQFLSEENMATHFSQ
LSLHNDHPYCSPPMTFSPALPPLRSPCSELLLWRYPGSLIPEALRLLRLGDTPSPPYPATPAGDIMEL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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