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Report for CCDS12580.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12580.1 Public Homo sapiens 19 EXOSC5 24 110 108 CCDS HistoryNCBI Gene:56915Re-query CCDS DB by CCDS ID:12580.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12580.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221233.9 ENSP00000221233.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221233.9Link to Ensembl Protein Viewer:ENSP00000221233.3Re-query CCDS DB by Nucleotide ID:ENST00000221233Re-query CCDS DB by Protein ID:ENSP00000221233
Original member Current member NCBI NM_020158.4 NP_064543.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020158.4Link to Protein Sequence:NP_064543.3Re-query CCDS DB by Nucleotide ID:NM_020158Re-query CCDS DB by Protein ID:NP_064543Link to BLAST:NP_064543.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064543.3 235 Q9NQT4 235 100% 0 0

Chromosomal Locations for CCDS 12580.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 41386633 41386725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41387514 41387603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41389765 41389905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41391841 41391962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41392867 41392980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 41397181 41397328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGAGGAGGAGACGCATACTGACGCCAAAATCCGTGCTGAAAATGGAACAGGGTCCAGCCCTCGGGGTC
CTGGCTGCAGCCTCCGGCACTTTGCCTGCGAACAGAACCTGCTGTCGCGGCCAGATGGCTCTGCTTCCTT
CCTGCAAGGTGACACCTCTGTCCTGGCGGGTGTGTACGGGCCGGCCGAGGTGAAGGTCAGCAAAGAGATT
TTCAACAAGGCCACACTCGAAGTGATCCTGAGGCCGAAGATTGGGCTGCCTGGTGTTGCAGAGAAGAGCC
GGGAGCGGCTGATCAGGAACACGTGCGAGGCGGTGGTGCTGGGCACGTTGCACCCCCGCACCTCCATCAC
CGTGGTGCTGCAGGTTGTCAGCGATGCCGGCTCTCTCCTGGCCTGTTGTCTGAATGCCGCCTGCATGGCA
TTGGTGGATGCAGGTGTGCCCATGCGGGCTCTCTTCTGTGGGGTCGCCTGCGCCCTGGACTCTGATGGGA
CCCTCGTGCTGGATCCTACATCCAAGCAAGAAAAGGAGGCCCGGGCAGTCCTGACCTTTGCCCTGGACAG
CGTGGAACGGAAGCTGCTGATGTCCAGCACCAAGGGGCTCTACTCAGACACTGAGCTCCAGCAGTGCCTG
GCTGCGGCCCAGGCCGCTTCGCAACACGTCTTCCGTTTCTACCGGGAATCGCTGCAGAGGCGTTACTCCA
AGAGCTGA

Translation (235 aa):
MEEETHTDAKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEI
FNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMA
LVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCL
AAAQAASQHVFRFYRESLQRRYSKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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