NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43307.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43307.1 Public Homo sapiens 5 PRDM9 24 110 108 CCDS HistoryNCBI Gene:56979Re-query CCDS DB by CCDS ID:43307.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43307.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296682.4 ENSP00000296682.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296682.4Link to Ensembl Protein Viewer:ENSP00000296682.4Re-query CCDS DB by Nucleotide ID:ENST00000296682Re-query CCDS DB by Protein ID:ENSP00000296682
Original member Current member EBI ENST00000502755.6 ENSP00000425471.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502755.6Link to Ensembl Protein Viewer:ENSP00000425471.2Re-query CCDS DB by Nucleotide ID:ENST00000502755Re-query CCDS DB by Protein ID:ENSP00000425471
Original member Current member NCBI NM_001376900.1 NP_001363829.1 Accepted alive Link to Nucleotide Sequence:NM_001376900.1Link to Protein Sequence:NP_001363829.1Re-query CCDS DB by Nucleotide ID:NM_001376900Re-query CCDS DB by Protein ID:NP_001363829Link to BLAST:NP_001363829.1
Original member Current member NCBI NM_020227.4 NP_064612.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020227.4Link to Protein Sequence:NP_064612.2Re-query CCDS DB by Nucleotide ID:NM_020227Re-query CCDS DB by Protein ID:NP_064612Link to BLAST:NP_064612.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363829.1 894 Q9NQV7 894 100% 0 0
NP_064612.2 894 Q9NQV7 894 100% 0 0

Chromosomal Locations for CCDS 43307.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 23509034 23509102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23509470 23509593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23509920 23510027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23517881 23517930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23521023 23521179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23522304 23522405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23522614 23522885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23523291 23523358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23524334 23524527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23526233 23527773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGAGCCCTGAAAAGTCCCAAGAGGAGAGCCCAGAAGAAGACACAGAGAGAACAGAGCGGAAGCCCATGG
TCAAAGATGCCTTCAAAGACATTTCCATATACTTCACCAAGGAAGAATGGGCAGAGATGGGAGACTGGGA
GAAAACTCGCTATAGGAATGTGAAAAGGAACTATAATGCACTGATTACTATAGGTCTCAGAGCCACTCGA
CCAGCTTTCATGTGTCACCGAAGGCAGGCCATCAAACTCCAGGTGGATGACACAGAAGATTCTGATGAAG
AATGGACCCCTAGGCAGCAAGTCAAACCTCCTTGGATGGCCTTAAGAGTGGAACAGCGTAAACACCAGAA
GGGAATGCCCAAGGCGTCATTCAGTAATGAATCTAGTTTGAAAGAATTGTCAAGAACAGCAAATTTACTG
AATGCAAGTGGCTCAGAGCAGGCTCAGAAACCAGTGTCCCCTTCTGGAGAAGCAAGTACCTCTGGACAGC
ACTCAAGACTAAAACTGGAACTCAGGAAGAAGGAGACTGAAAGAAAGATGTATAGCCTGCGAGAAAGAAA
GGGTCATGCATACAAAGAGGTCAGCGAGCCGCAGGATGATGATTACCTCTATTGTGAGATGTGTCAGAAC
TTCTTCATTGACAGCTGTGCTGCCCATGGGCCCCCTACATTTGTAAAGGACAGTGCAGTGGACAAGGGGC
ACCCCAACCGTTCAGCCCTCAGTCTGCCCCCAGGGCTGAGAATTGGGCCATCAGGCATCCCTCAGGCTGG
GCTTGGAGTATGGAATGAGGCATCTGATCTGCCGCTGGGTCTGCACTTTGGCCCTTATGAGGGCCGAATT
ACAGAAGACGAAGAGGCAGCCAACAATGGATACTCCTGGCTGATCACCAAGGGGAGAAACTGCTATGAGT
ATGTGGATGGAAAAGATAAATCCTGGGCCAACTGGATGAGGTATGTGAACTGTGCCCGGGATGATGAAGA
GCAGAACCTGGTGGCCTTCCAGTACCACAGGCAGATCTTCTATAGAACCTGCCGAGTCATTAGGCCAGGC
TGTGAACTGCTGGTCTGGTATGGGGATGAATACGGCCAGGAACTGGGCATCAAGTGGGGCAGCAAGTGGA
AGAAAGAGCTCATGGCAGGGAGAGAACCAAAGCCAGAGATCCATCCATGTCCCTCATGCTGTCTGGCCTT
TTCAAGTCAGAAATTTCTCAGTCAACATGTAGAACGCAATCACTCCTCTCAGAACTTCCCAGGACCATCT
GCAAGAAAACTCCTCCAACCAGAGAATCCCTGCCCAGGGGATCAGAATCAGGAGCAGCAATATCCAGATC
CACACAGCCGTAATGACAAAACCAAAGGTCAAGAGATCAAAGAAAGGTCCAAACTCTTGAATAAAAGGAC
ATGGCAGAGGGAGATTTCAAGGGCCTTTTCTAGCCCACCCAAAGGACAAATGGGGAGCTGTAGAGTGGGA
AAAAGAATAATGGAAGAAGAGTCCAGAACAGGCCAGAAAGTGAATCCAGGGAACACAGGCAAATTATTTG
TGGGGGTAGGAATCTCAAGAATTGCAAAAGTCAAGTATGGAGAGTGTGGACAAGGTTTCAGTGTTAAATC
AGATGTTATTACACACCAAAGGACACATACAGGGGAGAAGCTCTACGTCTGCAGGGAGTGTGGGCGGGGC
TTTAGCTGGAAGTCACACCTCCTCATTCACCAGAGGATACACACAGGGGAGAAGCCCTATGTCTGCAGGG
AGTGTGGGCGGGGCTTTAGCTGGCAGTCAGTCCTCCTCACTCACCAGAGGACACACACAGGGGAGAAGCC
CTATGTCTGCAGGGAGTGTGGGCGGGGCTTTAGCCGGCAGTCAGTCCTCCTCACTCACCAGAGGAGACAC
ACAGGGGAGAAGCCCTATGTCTGCAGGGAGTGTGGGCGGGGCTTTAGCCGGCAGTCAGTCCTCCTCACTC
ACCAGAGGAGACACACAGGGGAGAAGCCCTATGTCTGCAGGGAGTGTGGGCGGGGCTTTAGCTGGCAGTC
AGTCCTCCTCACTCACCAGAGGACACACACAGGGGAGAAGCCCTATGTCTGCAGGGAGTGTGGGCGGGGC
TTTAGCTGGCAGTCAGTCCTCCTCACTCACCAGAGGACACACACAGGGGAGAAGCCCTATGTCTGCAGGG
AGTGTGGGCGGGGCTTTAGCAATAAGTCACACCTCCTCAGACACCAGAGGACACACACAGGGGAGAAGCC
CTATGTCTGCAGGGAGTGTGGGCGGGGCTTTCGCGATAAGTCACACCTCCTCAGACACCAGAGGACACAC
ACAGGGGAGAAGCCCTATGTCTGCAGGGAGTGTGGGCGGGGCTTTAGAGATAAGTCAAACCTCCTCAGTC
ACCAGAGGACACACACAGGGGAGAAGCCCTATGTCTGCAGGGAGTGTGGGCGGGGCTTTAGCAATAAGTC
ACACCTCCTCAGACACCAGAGGACACACACAGGGGAGAAGCCCTATGTCTGCAGGGAGTGTGGGCGGGGC
TTTCGCAATAAGTCACACCTCCTCAGACACCAGAGGACACACACAGGGGAGAAGCCCTACGTCTGCAGGG
AGTGTGGGCGGGGCTTTAGCGATAGGTCAAGCCTCTGCTATCACCAGAGGACACACACAGGGGAGAAGCC
CTACGTCTGCAGGGAGGATGAGTAA

Translation (894 aa):
MSPEKSQEESPEEDTERTERKPMVKDAFKDISIYFTKEEWAEMGDWEKTRYRNVKRNYNALITIGLRATR
PAFMCHRRQAIKLQVDDTEDSDEEWTPRQQVKPPWMALRVEQRKHQKGMPKASFSNESSLKELSRTANLL
NASGSEQAQKPVSPSGEASTSGQHSRLKLELRKKETERKMYSLRERKGHAYKEVSEPQDDDYLYCEMCQN
FFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRI
TEDEEAANNGYSWLITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPG
CELLVWYGDEYGQELGIKWGSKWKKELMAGREPKPEIHPCPSCCLAFSSQKFLSQHVERNHSSQNFPGPS
ARKLLQPENPCPGDQNQEQQYPDPHSRNDKTKGQEIKERSKLLNKRTWQREISRAFSSPPKGQMGSCRVG
KRIMEEESRTGQKVNPGNTGKLFVGVGISRIAKVKYGECGQGFSVKSDVITHQRTHTGEKLYVCRECGRG
FSWKSHLLIHQRIHTGEKPYVCRECGRGFSWQSVLLTHQRTHTGEKPYVCRECGRGFSRQSVLLTHQRRH
TGEKPYVCRECGRGFSRQSVLLTHQRRHTGEKPYVCRECGRGFSWQSVLLTHQRTHTGEKPYVCRECGRG
FSWQSVLLTHQRTHTGEKPYVCRECGRGFSNKSHLLRHQRTHTGEKPYVCRECGRGFRDKSHLLRHQRTH
TGEKPYVCRECGRGFRDKSNLLSHQRTHTGEKPYVCRECGRGFSNKSHLLRHQRTHTGEKPYVCRECGRG
FRNKSHLLRHQRTHTGEKPYVCRECGRGFSDRSSLCYHQRTHTGEKPYVCREDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH