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Report for CCDS9086.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9086.1 Public Homo sapiens 12 CHPT1 24 110 108 CCDS HistoryNCBI Gene:56994Re-query CCDS DB by CCDS ID:9086.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9086.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229266.8 ENSP00000229266.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000229266.8Link to Ensembl Protein Viewer:ENSP00000229266.3Re-query CCDS DB by Nucleotide ID:ENST00000229266Re-query CCDS DB by Protein ID:ENSP00000229266
Original member Current member NCBI NM_020244.3 NP_064629.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020244.3Link to Protein Sequence:NP_064629.2Re-query CCDS DB by Nucleotide ID:NM_020244Re-query CCDS DB by Protein ID:NP_064629Link to BLAST:NP_064629.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064629.2 406 Q8WUD6-1 406 100% 0 0

Chromosomal Locations for CCDS 9086.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 101697862 101698134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101714090 101714237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101714504 101714645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101716728 101716812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101720123 101720254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101723168 101723326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101723722 101723847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101726294 101726404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 101728901 101728945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGCGGCAGGCGCCGGGGCCGGGTCCGCGCCGCGCTGGCTGAGGGCGCTGAGCGAGCCGCTGAGCGCGG
CGCAGCTGCGGCGACTGGAGGAGCACCGCTACAGCGCGGCGGGCGTCTCGCTGCTCGAGCCGCCGCTGCA
GCTCTACTGGACCTGGCTGCTCCAGTGGATCCCGCTCTGGATGGCCCCCAACTCCATCACCCTGCTGGGG
CTCGCCGTCAACGTGGTCACCACGCTCGTGCTCATCTCCTACTGTCCCACGGCCACCGAAGAGGCACCAT
ACTGGACATACCTTTTATGTGCACTGGGACTTTTTATTTACCAGTCACTGGATGCTATTGATGGGAAACA
AGCCAGAAGAACAAACTCTTGTTCCCCTTTAGGGGAGCTCTTTGACCATGGCTGTGACTCTCTTTCCACA
GTATTTATGGCAGTGGGAGCTTCAATTGCCGCTCGCTTAGGAACTTATCCTGACTGGTTTTTTTTCTGCT
CTTTTATTGGGATGTTTGTGTTTTATTGCGCTCATTGGCAGACTTATGTTTCAGGCATGTTGAGATTTGG
AAAAGTGGATGTAACTGAAATTCAGATAGCTTTAGTGATTGTCTTTGTGTTGTCTGCATTTGGAGGAGCA
ACAATGTGGGACTATACGATTCCTATTCTAGAAATAAAATTGAAGATCCTTCCAGTTCTTGGATTTCTAG
GTGGAGTAATATTTTCCTGTTCAAATTATTTCCATGTTATCCTCCATGGTGGTGTTGGCAAGAATGGATC
CACTATAGCAGGCACCAGTGTCTTGTCACCTGGACTCCACATAGGACTAATTATTATACTGGCAATAATG
ATCTATAAAAAGTCAGCAACTGATGTGTTTGAAAAGCATCCTTGTCTTTATATCCTAATGTTTGGATGTG
TCTTTGCTAAAGTCTCACAAAAATTAGTGGTAGCTCACATGACCAAAAGTGAACTATATCTTCAAGACAC
TGTCTTTTTGGGGCCAGGTCTTTTGTTTTTAGACCAGTACTTTAATAACTTTATAGACGAATATGTTGTT
CTATGGATGGCAATGGTGATTTCTTCATTTGATATGGTGATATACTTTAGTGCTTTGTGCCTGCAAATTT
CAAGACACCTTCATCTAAATATATTCAAGACTGCATGTCATCAAGCACCTGAACAGGTTCAAGTTCTTTC
TTCAAAGAGTCATCAGAATAACATGGATTGA

Translation (406 aa):
MAAGAGAGSAPRWLRALSEPLSAAQLRRLEEHRYSAAGVSLLEPPLQLYWTWLLQWIPLWMAPNSITLLG
LAVNVVTTLVLISYCPTATEEAPYWTYLLCALGLFIYQSLDAIDGKQARRTNSCSPLGELFDHGCDSLST
VFMAVGASIAARLGTYPDWFFFCSFIGMFVFYCAHWQTYVSGMLRFGKVDVTEIQIALVIVFVLSAFGGA
TMWDYTIPILEIKLKILPVLGFLGGVIFSCSNYFHVILHGGVGKNGSTIAGTSVLSPGLHIGLIIILAIM
IYKKSATDVFEKHPCLYILMFGCVFAKVSQKLVVAHMTKSELYLQDTVFLGPGLLFLDQYFNNFIDEYVV
LWMAMVISSFDMVIYFSALCLQISRHLHLNIFKTACHQAPEQVQVLSSKSHQNNMD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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