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Report for CCDS39803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39803.1 Public Mus musculus 7 Bcam 23 108 98 CCDS HistoryNCBI Gene:57278Re-query CCDS DB by CCDS ID:39803.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39803.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003061.13 ENSMUSP00000003061.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003061.13Link to Ensembl Protein Viewer:ENSMUSP00000003061.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000003061Re-query CCDS DB by Protein ID:ENSMUSP00000003061
Original member Current member NCBI NM_020486.2 NP_065232.1 Accepted alive Link to Nucleotide Sequence:NM_020486.2Link to Protein Sequence:NP_065232.1Re-query CCDS DB by Nucleotide ID:NM_020486Re-query CCDS DB by Protein ID:NP_065232Link to BLAST:NP_065232.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065232.1 622 Q9R069 622 100% 0 0

Chromosomal Locations for CCDS 39803.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19756614 19756619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19756708 19756825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19758424 19758568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19758659 19758803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19758960 19759096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19760047 19760188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19760294 19760412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19764040 19764196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19764653 19764789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19765334 19765516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19765613 19765709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19766689 19766759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19766836 19767061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19768452 19768573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19770407 19770470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGAACCCCCTGACGCCCGCGCAGGGCTGCTGTGGCTCACCTTCCTGCTGTCGGGCTACTCAGGTGCCC
AGGCTGAGCTGCACGTGTCCGTGCCCCCACGGGTGGAGGTGATGCGAGGCGAGCAAGTCGCCCTGGACTG
CACTCCACGGGAGCACCCTGAGCATTACGTGCTGGAATGGTTCCTCGTTGATGGTACTGGGGCTCGACAC
CGTCTGGCTTCTGTGGAACCACAGGGCTCAGAGTTCCTGGGCACAGTCCACTCTCTGGGCCGCGTACCCC
CATACGAGGTAGACTCTCGTGGGCGCCTGGTGATAGCAAAGGTCCAGGTGGGCGATGGACGGGACTACGT
GTGCGTAGTGAAGGCTGGGGCAGCGGGTACCTCAGAGGCCACCTCAAGTGTCCGTGTGTTTGCAACACCA
GAGGATACGGAGGTGTCTCCCAACAAAGGGACGCTGTCTGTGATGGACCAGTTTGCCCAGGAGATTGCCA
CCTGCAGCAGCAACAACGGAAACCCCGTGCCTCGGATCACATGGTACCGAAACGGGCAGCGTCTGGAAGT
ACCCATGGAGGTGAACCAAAAGGGCTACATAACCATCCGTACTGTCCGGGAAGCCTCAGGCCTGTACTCC
CTGACCAGCACCCTCTACCTGAGGCTGCACAAGGATGATCGGGATGCCAACTTCCACTGTGCTGCTCACT
ACGACTTGCCCTCAGGCCAACATGGCCGCCTGGACAGCCATACCTTTCGCCTCACCCTGCACTATCCCAC
GGAACATGTAGAATTCTGGGTGGGGAGCCCGTCCACCACGGAGGGCTGGGTCCGTGAGGGTGATGCTGTC
CAGCTGCTCTGCCAGGGCGATGGCAGCCCCAGCCCAGAGTATTCTTTTTTCCGCCAGCAGGGTACCCAGG
AGGAACAGCTGAATGTCAACCTCAAGGGAAACTTGACCCTAGAACGGGTGCATCGGAACCAGAGCGGGAT
CTACGGCTGCAGAGTGGAGGATTACGATGCCGACGAGGAAGTGCAACTTGTCAAGAAGCTAAAGCTGCAC
GTGGCCTACCTGGATCCATTGGAGCTGAGCGTGCCTGAGGAGCTCTTCGTATTCCTGAACAGCAGCAGCA
CGGTGGTGAACTGCTCCGCTAGAGGCCTGCCTACTCCTACTGTGCGATGGACCAAGGATTCTGTGACCCT
TGCAGACGGCCCCATGCTCTCTCTCCAGTCTGTGACCTTTGACTCAGCTGGCACCTATACCTGTGAGGCG
TCCACACCCACAGTCCCCCTCCTGAGCCGCACACAGAGTTTCCAGCTCATCGTCCAAGGAGCACCAGAGT
TAAAACCGAATGAGATAATGCCCAAATCAGGGAATAGCTGGACAGAAGGCGATGAAGTCATGCTGACCTG
CTCCGCCCGGGGCTTCCCAGAGCCCAAACTCACCTGGAGTCAGCGAGGCGATACTCCAGCAGAGCCGCCC
TTTGAGGGTAGAGGCTGGAAGAGCAGCTCGCTGATGGTGAAAGTGACCAGCGCCCTGAGCCGAGAGGGCG
TGTCCTGTGAAGCGTCTAACATCCATGGCAAGAAAGGCCATGTCTTCCACTTTGGCTCTGTGGCCCCTCA
GACTGCCCAGGCTGGAGTGGCTGTCATGGCTGTAGCTGTCAGCGTCGGTCTTTTGCTACTCGTGGTCGCT
GCTTTCTATTGCATGAGACGCAAAGGGCGCCCTGGCTGCTGCCGGCGAGCAGAGAAAGGGGCGCCGCCAG
CCAGGGAACCGGAGTTGAGCCACTCTGGGTCAGAGCGGCCAGAACACACGGGCCTTCTCATGGGTGGGCC
CTCCGGAGGAGGCAGAGGTGGCAGTGGAGGCTTTGGAGATGAGTGTTGA

Translation (622 aa):
MEPPDARAGLLWLTFLLSGYSGAQAELHVSVPPRVEVMRGEQVALDCTPREHPEHYVLEWFLVDGTGARH
RLASVEPQGSEFLGTVHSLGRVPPYEVDSRGRLVIAKVQVGDGRDYVCVVKAGAAGTSEATSSVRVFATP
EDTEVSPNKGTLSVMDQFAQEIATCSSNNGNPVPRITWYRNGQRLEVPMEVNQKGYITIRTVREASGLYS
LTSTLYLRLHKDDRDANFHCAAHYDLPSGQHGRLDSHTFRLTLHYPTEHVEFWVGSPSTTEGWVREGDAV
QLLCQGDGSPSPEYSFFRQQGTQEEQLNVNLKGNLTLERVHRNQSGIYGCRVEDYDADEEVQLVKKLKLH
VAYLDPLELSVPEELFVFLNSSSTVVNCSARGLPTPTVRWTKDSVTLADGPMLSLQSVTFDSAGTYTCEA
STPTVPLLSRTQSFQLIVQGAPELKPNEIMPKSGNSWTEGDEVMLTCSARGFPEPKLTWSQRGDTPAEPP
FEGRGWKSSSLMVKVTSALSREGVSCEASNIHGKKGHVFHFGSVAPQTAQAGVAVMAVAVSVGLLLLVVA
AFYCMRRKGRPGCCRRAEKGAPPAREPELSHSGSERPEHTGLLMGGPSGGGRGGSGGFGDEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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