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Report for CCDS47089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47089.1 Public Homo sapiens 4 LIN54 24 110 108 CCDS HistoryNCBI Gene:132660Re-query CCDS DB by CCDS ID:47089.1Re-query CCDS DB by GeneID:132660See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47089.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442461.6 ENSP00000398265.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442461.6Link to Ensembl Protein Viewer:ENSP00000398265.2Re-query CCDS DB by Nucleotide ID:ENST00000442461Re-query CCDS DB by Protein ID:ENSP00000398265
Original member Current member EBI ENST00000446851.6 ENSP00000407139.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446851.6Link to Ensembl Protein Viewer:ENSP00000407139.2Re-query CCDS DB by Nucleotide ID:ENST00000446851Re-query CCDS DB by Protein ID:ENSP00000407139
Original member Current member EBI ENST00000510557.5 ENSP00000421045.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510557.5Link to Ensembl Protein Viewer:ENSP00000421045.1Re-query CCDS DB by Nucleotide ID:ENST00000510557Re-query CCDS DB by Protein ID:ENSP00000421045
Original member Current member NCBI NM_001115007.3 NP_001108479.1 Accepted alive Link to Nucleotide Sequence:NM_001115007.3Link to Protein Sequence:NP_001108479.1Re-query CCDS DB by Nucleotide ID:NM_001115007Re-query CCDS DB by Protein ID:NP_001108479Link to BLAST:NP_001108479.1
Original member Current member NCBI NM_001115008.3 NP_001108480.1 Accepted alive Link to Nucleotide Sequence:NM_001115008.3Link to Protein Sequence:NP_001108480.1Re-query CCDS DB by Nucleotide ID:NM_001115008Re-query CCDS DB by Protein ID:NP_001108480Link to BLAST:NP_001108480.1
Original member Current member NCBI NM_001288997.1 NP_001275926.1 Accepted alive Link to Nucleotide Sequence:NM_001288997.1Link to Protein Sequence:NP_001275926.1Re-query CCDS DB by Nucleotide ID:NM_001288997Re-query CCDS DB by Protein ID:NP_001275926Link to BLAST:NP_001275926.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108479.1 528 Q6MZP7-3 528 100% 0 0
NP_001108480.1 528 Q6MZP7-3 528 100% 0 0
NP_001275926.1 528 Q6MZP7-3 528 100% 0 0

Chromosomal Locations for CCDS 47089.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 82928102 82928303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82930943 82931145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82935981 82936118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82936279 82936381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82937227 82937298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82938413 82938504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82939539 82939736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82939889 82939962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82946258 82946474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82970327 82970469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82978883 82979006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 82984824 82984844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGAGGTGGTGCCAGCTGAGATTGCTAAGAAGCCTCGAACGCCAACCTCTGGTCCAGTAATCACGAAGC
TGATCTTTGCAAAACCAATTAATAGTAAAGCAGTTACAGGACAGACAACTCAAGTTTCACCACCAGTTAT
TGCAGGTAGGGTTCTTTCACAGTCTACTCCCGGAACTCCATCAAAGACCATAACAATATCTGAAAGTGGT
GTTATTGGATCAACTTTAAATTCTACAACACAGACACCAAATAAAATAGCCATCTCACCTTTGAAATCGC
CAAATAAGGCAGTGAAATCAACTGTGCAGACCATCACTGTTGGAGGAGTGAGCACATCACAGTTTAAGAC
AATTATTCCTCTGGCAACTGCTCCCAATGTCCAGCAGATTCAAGTGCCTGGAAGCAAGTTTCATTATGTC
CGACTTGTTACTGCCACATCAGCCAGTAGCTCAACCCAGCCAGTTAGTCAGAATCCCAGTACAAACACTC
AGCCTCTTCAGCAAGCAAAGCCAGTGGTTGTTAATACAACCCCAGTGCGGATGTCAGTTCCAATTGTCTC
AGCTCAGGCTGTCAAACAAGTTGTTCCAAAACCAATCAATCCAACTTCACAAATAGTAACTACTAGCCAG
CCACAGCAACGGCTTATCATGCCTGCCACACCACTGCCACAGATCCAGCCCAACCTCACTAACCTGCCAC
CAGGCACTGTCCTGGCACCAGCTCCGGGAACAGGGAATGTGGGTTATGCAGTGCTTCCAGCTCAGTATGT
TACTCAGCTACAGCAGTCTTCATATGTATCAATAGCAAGCAACTCTACCTTTACTGGAACATCTGGTATC
CAGACCCAGGCACGGCTTCCATTCAATGGCATAATCCCATCAGAGTCGGCCAGTCGGCCCCGAAAGCCCT
GTAATTGTACAAAATCACTGTGTTTGAAATTGTATTGTGATTGCTTTGCAAATGGTGAATTTTGCAACAA
CTGCAATTGTACTAATTGTTACAACAATTTGGAACATGAAAATGAAAGGCAAAAAGCAATAAAGGCATGC
CTTGACAGAAATCCAGAAGCCTTTAAGCCTAAGATAGGGAAAGGAAAGGAGGGAGAATCTGATCGACGTC
ATAGCAAAGGGTGTAATTGCAAACGATCAGGATGTCTTAAAAACTACTGTGAATGCTATGAGGCAAAAAT
AATGTGTTCCTCAATATGCAAATGTATTGGCTGTAAGAATTTTGAAGAAAGCCCGGAAAGGAAGACATTG
ATGCATTTGGCAGATGCAGCTGAAGTAAGGGTACAGCAACAAACAGCAGCCAAGACGAAGTTATCCTCTC
AAATTTCAGACTTGCTTACTAGGCCAACACCAGCTTTAAATAGTGGAGGCGGAAAATTGCCATTTACATT
TGTAACTAAGGAAGTAGCTGAAGCCACATGTAATTGCCTCCTTGCCCAGGCAGAGCAGGCAGACAAGAAG
GGAAAATCAAAGGCAGCAGCGGAACGGATGATACTTGAGGAATTCGGACGATGTTTGATGAGTGTCATCA
ACTCTGCAGGAAAGGCAAAAAGTGACCCTTGTGCCATGAATTGCTAA

Translation (528 aa):
MEVVPAEIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISESG
VIGSTLNSTTQTPNKIAISPLKSPNKAVKSTVQTITVGGVSTSQFKTIIPLATAPNVQQIQVPGSKFHYV
RLVTATSASSSTQPVSQNPSTNTQPLQQAKPVVVNTTPVRMSVPIVSAQAVKQVVPKPINPTSQIVTTSQ
PQQRLIMPATPLPQIQPNLTNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIASNSTFTGTSGI
QTQARLPFNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQKAIKAC
LDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEESPERKTL
MHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGGKLPFTFVTKEVAEATCNCLLAQAEQADKK
GKSKAAAERMILEEFGRCLMSVINSAGKAKSDPCAMNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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