NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12272.1 Public Homo sapiens 19 ZNF490 24 110 108 CCDS HistoryNCBI Gene:57474Re-query CCDS DB by CCDS ID:12272.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311437.11 ENSP00000311521.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311437.11Link to Ensembl Protein Viewer:ENSP00000311521.6Re-query CCDS DB by Nucleotide ID:ENST00000311437Re-query CCDS DB by Protein ID:ENSP00000311521
Original member Current member NCBI NM_020714.3 NP_065765.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020714.3Link to Protein Sequence:NP_065765.1Re-query CCDS DB by Nucleotide ID:NM_020714Re-query CCDS DB by Protein ID:NP_065765Link to BLAST:NP_065765.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065765.1 529 Q9ULM2 529 100% 0 0

Chromosomal Locations for CCDS 12272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12580485 12581724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12582850 12582910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12583430 12583556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12609158 12609202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12610564 12610680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGCGCAGGAATTCCAGTCTCAGTTTCCAGATGGAGCGACCCCTCGAGGAGCAAGTCCAGAGCAAGTGGT
CGTCTAGTCAAGGCCGCACAGGAACAGGAGGGTCTGATGTCCTCCAGATGCAGAACAGTGAACACCATGG
ACAAAGCATCAAGACTCAAACTGACTCCATCTCCCTTGAGGATGTGGCTGTGAACTTCACCCTGGAGGAG
TGGGCTTTGCTGGATCCTGGCCAGAGGAATATCTACAGAGATGTGATGCGGGCAACCTTCAAGAACCTGG
CCTGTATAGGGGAAAAATGGAAAGACCAGGATATTGAAGATGAACACAAAAACCAGGGAAGAAATCTAAG
AAGTCCTATGGTTGAAGCACTCTGTGAAAATAAAGAAGATTGTCCATGTGGAAAAAGCACTAGCCAGATT
CCTGATCTTAATACGAACCTGGAAACTCCTACTGGATTAAAACCATGTGACTGCAGTGTGTGTGGGGAAG
TCTTCATGCATCAGGTCTCCCTTAATAGGCACATGAGATCTCACACTGAACAGAAACCAAATGAGTGTCA
CGAATATGGAGAGAAGCCACATAAATGCAAAGAATGTGGGAAAACCTTCACTCGCAGCTCCAGTATTCGA
ACCCATGAAAGAATTCACACTGGAGAGAAACCCTATGAATGTAAGGAATGTGGCAAAGCCTTCGCATTTC
TCTTTTCCTTTCGAAACCATATAAGAATTCATACTGGAGAGACACCCTATGAATGTAAGGAATGTGGGAA
GGCATTCAGATATCTCACTGCTCTTCGGCGCCATGAAAAAAATCACACTGGAGAGAAACCCTACAAATGT
AAACAGTGTGGAAAAGCCTTTATATATTACCAGCCTTTTCTAACCCACGAAAGGACTCACACTGGAGAGA
AACCTTATGAATGTAAGCAATGTGGGAAAGCCTTCAGTTGTCCCACGTACTTACGGAGTCATGAGAAAAC
TCATACTGGAGAGAAACCTTTTGTATGTAGGGAATGTGGGAGAGCCTTCTTTTCTCACTCAAGCCTTCGA
AAACACGTGAAAACCCACACCGGAGTTCAACCTTATACATGTAAGAAATGTGGGGAAGCCTTCAAGTCAT
CTAGTTCCTGTGAAGTGCACGAAAGAACTCATTTTGGAGAAAAACCCTATGAATGTAAACAATGTGGTAA
AGCCTTCAATTCTTCAAGTTACCTTCAGTTGCACGAAAGAGTTCACACTGGCGAGAAAACTTACGAATGT
AAAGAATGTGGTAAAGCCTTTCTTTATTCCACTCACTTTCGAATCCATGAAAGAACCCATACTAGAGAGA
AACCCTATGAATGCAAACAGTGTGGTCGGGTCTTCATTTACTTCAGTCACCTTCGAAGGCACGAAAGAAG
TCACACTGGAGTGAAACCATGTGAGTGTAAGCAGTGTGGCAAAGCTTTCACTTGTTTAAATTCCCTGAAA
GTACACAAAAGAATTCATACTGGAGAAAGACCCTTTCAGTGTAGACAATGTGGTAAAGCCTTCAGTTACT
CAAAGTCTTTGCACGTGCACGAAAGGACTCATAGTAGACAGAAGCCCTAA

Translation (529 aa):
MRRNSSLSFQMERPLEEQVQSKWSSSQGRTGTGGSDVLQMQNSEHHGQSIKTQTDSISLEDVAVNFTLEE
WALLDPGQRNIYRDVMRATFKNLACIGEKWKDQDIEDEHKNQGRNLRSPMVEALCENKEDCPCGKSTSQI
PDLNTNLETPTGLKPCDCSVCGEVFMHQVSLNRHMRSHTEQKPNECHEYGEKPHKCKECGKTFTRSSSIR
THERIHTGEKPYECKECGKAFAFLFSFRNHIRIHTGETPYECKECGKAFRYLTALRRHEKNHTGEKPYKC
KQCGKAFIYYQPFLTHERTHTGEKPYECKQCGKAFSCPTYLRSHEKTHTGEKPFVCRECGRAFFSHSSLR
KHVKTHTGVQPYTCKKCGEAFKSSSSCEVHERTHFGEKPYECKQCGKAFNSSSYLQLHERVHTGEKTYEC
KECGKAFLYSTHFRIHERTHTREKPYECKQCGRVFIYFSHLRRHERSHTGVKPCECKQCGKAFTCLNSLK
VHKRIHTGERPFQCRQCGKAFSYSKSLHVHERTHSRQKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH