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Report for CCDS628.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
628.3 Public Homo sapiens 1 CACHD1 24 110 108 CCDS HistoryNCBI Gene:57685Re-query CCDS DB by CCDS ID:628.3See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 628.2
This CCDS was updated to extend the coding region at the 5' end, which extends the N-terminus of the protein by 51aa. The update is supported by cross-species conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 628.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000651257.2 ENSP00000498498.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651257.2Link to Ensembl Protein Viewer:ENSP00000498498.1Re-query CCDS DB by Nucleotide ID:ENST00000651257Re-query CCDS DB by Protein ID:ENSP00000498498
Original member Current member NCBI NM_020925.4 NP_065976.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020925.4Link to Protein Sequence:NP_065976.3Re-query CCDS DB by Nucleotide ID:NM_020925Re-query CCDS DB by Protein ID:NP_065976Link to BLAST:NP_065976.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065976.3 1274 Q5VU97-1 1274 100% 0 0

Chromosomal Locations for CCDS 628.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 64470745 64470942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64550594 64550656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64582156 64582304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64602806 64602912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64629355 64629481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64632599 64632743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64634044 64634260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64641820 64641969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64647801 64648034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64652161 64652310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64653758 64653881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64654686 64654803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64658705 64658873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64663695 64663837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64664498 64664679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64666057 64666167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64671564 64671686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64673158 64673257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64673348 64673464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64675401 64675561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64675897 64675983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64676895 64677011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64678159 64678310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64679595 64679756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64681258 64681335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64682005 64682106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64691323 64691561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3825 nt):
ATGGCCCGCCAGCCGGAGGAAGAGGAGACGGCCGTGGCCCGGGCGCGGCGGCCGCCCCTCTGGCTGCTCT
GCCTGGTCGCGTGCTGGCTCCTGGGCGCCGGGGCCGAAGCCGACTTCTCCATCCTGGACGAGGCGCAAGT
GCTGGCGAGCCAGATGCGGAGGCTGGCGGCCGAGGAGCTGGGGGTCGTCACCATGCAGCGGATATTCAAC
TCCTTTGTTTACACTGAGAAAATCTCAAATGGAGAAAGTGAAGTACAGCAGCTAGCCAAAAAAATCCGAG
AGAAGTTCAACCGTTACTTGGATGTGGTCAATCGGAACAAGCAAGTTGTAGAAGCATCCTATACGGCTCA
CCTAACCTCTCCCCTAACTGCAATTCAAGACTGCTGTACTATCCCACCTTCCATGATGGAATTCGATGGG
AACTTTAATACCAATGTGTCTAGAACAATTAGTTGTGATCGACTTTCTACTACTGTTAATAGCCGGGCCT
TCAATCCAGGACGAGACTTAAATTCAGTTCTTGCAGACAACCTGAAATCCAACCCTGGAATTAAGTGGCA
ATATTTCAGTTCAGAAGAAGGAATTTTCACTGTTTTCCCAGCACACAAGTTCCGGTGTAAGGGCAGCTAC
GAACACCGCAGTAGACCCATCTACGTCTCTACAGTCCGGCCGCAGTCAAAGCACATAGTAGTGATTCTGG
ACCACGGGGCTTCAGTCACAGACACTCAGCTTCAGATTGCCAAGGACGCTGCTCAGGTCATCCTCAGCGC
CATCGATGAACATGACAAGATTTCTGTGTTAACTGTGGCAGATACCGTCCGGACTTGCTCACTAGACCAG
TGCTATAAGACCTTCTTGTCTCCAGCCACCAGTGAGACAAAAAGGAAAATGTCCACCTTTGTTAGCAGCG
TGAAGTCTTCAGACAGTCCTACCCAGCACGCAGTGGGATTCCAAAAGGCATTTCAGCTGATTCGAAGTAC
AAACAATAACACAAAGTTCCAAGCAAATACAGACATGGTCATCATTTACCTGTCAGCTGGCATTACATCA
AAGGACTCTTCGGAAGAAGATAAAAAAGCGACTCTCCAAGTCATCAATGAAGAAAATAGCTTTCTAAACA
ACTCTGTAATGATTCTCACCTATGCCCTCATGAACGATGGGGTGACTGGTTTGAAAGAGCTGGCTTTTCT
GAGGGATCTAGCTGAACAGAATTCAGGGAAGTACGGTGTGCCAGACCGGATGGCCTTGCCTGTGATTAAG
GGCAGCATGATGGTGCTGAATCAGTTGAGCAACCTGGAGACCACAGTGGGCAGGTTCTACACAAACCTTC
CCAACCGGATGATTGATGAAGCCGTCTTCAGCCTGCCCTTCTCTGATGAGATGGGAGATGGTTTGATAAT
GACTGTGAGTAAACCCTGTTATTTTGGAAACCTACTTCTGGGAATTGTAGGTGTGGACGTGAATCTGGCT
TACATTCTTGAAGACGTGACGTATTACCAAGACTCTTTGGCTTCCTATACTTTTCTCATAGACGACAAAG
GATATACACTTATGCACCCATCTCTTACCAGGCCATATTTATTGTCAGAGCCCCCACTTCATACTGACAT
CATACATTATGAAAATATTCCAAAATTTGAATTAGTTCGGCAAAATATCCTAAGCCTCCCTCTGGGCAGC
CAGATTATCGCAGTCCCTGTGAACTCATCCCTGTCTTGGCACATAAACAAGCTGAGAGAAACTGGAAAGG
AAGCCTACAATGTTAGCTATGCCTGGAAGATGGTACAAGACACTTCCTTTATTCTGTGTATTGTGGTGAT
ACAACCAGAAATACCTGTGAAACAACTGAAGAACCTCAACACTGTTCCCAGCAGCAAGCTGCTGTACCAC
CGGCTGGATCTCCTTGGCCAGCCCAGTGCTTGCCTCCACTTCAAACAGCTGGCAACCCTAGAAAGTCCCA
CCATCATGCTGTCTGCTGGCAGCTTTTCCTCCCCCTATGAGCACCTCAGCCAGCCAGAGACAAAGCGCAT
GGTAGAGCACTACACCGCCTATCTCAGCGACAACACCCGCCTCATTGCTAACCCGGGCCTCAAATTCTCT
GTCAGAAATGAAGTAATGGCTACCAGCCACGTCACAGATGAATGGATGACACAAATGGAAATGAGTAGCC
TGAACACTTACATTGTCCGCCGTTACATAGCAACACCCAATGGCGTCCTCAGAATTTATCCTGGTTCCCT
CATGGACAAAGCATTTGATCCCACTAGGAGACAATGGTATCTCCATGCAGTAGCTAATCCAGGGTTGATT
TCTTTGACTGGTCCTTACTTAGATGTTGGAGGAGCTGGTTATGTTGTGACAATCAGTCACACAATTCATT
CATCCAGTACACAGCTGTCTTCTGGGCACACTGTGGCTGTGATGGGCATTGACTTCACACTCAGATACTT
CTACAAAGTTCTGATGGACCTATTACCTGTCTGTAACCAAGATGGTGGCAACAAAATAAGGTGCTTCATA
ATGGAGGACAGGGGTTATCTGGTGGCGCACCCGACTCTCATCGACCCCAAAGGACATGCACCTGTGGAGC
AGCAGCACATCACCCACAAGGAGCCCCTGGTAGCAAATGATATCCTCAACCACCCCAACTTTGTAAAGAA
AAACCTGTGCAACAGCTTCAGTGACAGAACGGTCCAGAGGTTTTATAAATTCAACACCAGCCTTGCGGGG
GATTTGACGAACCTTGTGCATGGCAGCCACTGTTCCAAATACAGATTAGCAAGGATCCCAGGAACCAACG
CGTTTGTTGGCATTGTCAACGAAACCTGCGACTCTCTTGCCTTCTGTGCCTGCAGCATGGTGGACCGACT
CTGTCTCAACTGTCACCGAATGGAACAAAATGAATGTGAATGTCCTTGTGAGTGCCCTCTAGAGGTCAAT
GAGTGCACTGGCAACCTCACCAATGCAGAGAACCGAAACCCCAGCTGCGAGGTCCACCAGGAGCCGGTGA
CATACACAGCTATTGACCCTGGCCTGCAAGATGCTCTTCACCAGTGTGTCAACAGCAGGTGCAGTCAGAG
GCTGGAAAGTGGGGACTGTTTTGGGGTGCTGGATTGTGAATGGTGCATGGTGGACAGTGATGGAAAGACT
CACCTGGACAAACCCTACTGTGCCCCCCAGAAAGAATGCTTCGGGGGGATTGTGGGAGCCAAAAGTCCCT
ACGTTGATGACATGGGAGCAATAGGTGATGAGGTGATCACATTAAACATGATTAAAAGCGCCCCTGTGGG
TCCTGTGGCTGGAGGGATCATGGGATGCATCATGGTCTTGGTCCTGGCGGTGTATGCCTACCGCCACCAG
ATTCATCGCCGGAGCCATCAGCATATGTCTCCTCTTGCTGCCCAAGAAATGTCAGTGCGTATGTCCAACC
TGGAGAATGACAGAGATGAAAGGGACGACGACAGCCACGAAGACAGAGGCATCATCAGCAACACTCGGTT
TATAGCTGCGGTCATCGAACGACATGCACACAGTCCAGAAAGAAGGCGCCGCTACTGGGGTCGATCAGGA
ACAGAAAGTGATCATGGTTACAGCACCATGAGCCCACAGGAGGACAGTGAAAATCCTCCATGCAACAATG
ACCCCTTGTCAGCCGGGGTCGATGTGGGAAACCATGATGAGGACTTAGACCTGGATACCCCCCCTCAGAC
TGCTGCCCTACTAAGTCACAAGTTCCACCACTACCGGTCACACCACCCTACACTTCATCATAGCCACCAC
TTACAGGCGGCCGTCACGGTACACACTGTCGATGCAGAATGCTAA

Translation (1274 aa):
MARQPEEEETAVARARRPPLWLLCLVACWLLGAGAEADFSILDEAQVLASQMRRLAAEELGVVTMQRIFN
SFVYTEKISNGESEVQQLAKKIREKFNRYLDVVNRNKQVVEASYTAHLTSPLTAIQDCCTIPPSMMEFDG
NFNTNVSRTISCDRLSTTVNSRAFNPGRDLNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHKFRCKGSY
EHRSRPIYVSTVRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISVLTVADTVRTCSLDQ
CYKTFLSPATSETKRKMSTFVSSVKSSDSPTQHAVGFQKAFQLIRSTNNNTKFQANTDMVIIYLSAGITS
KDSSEEDKKATLQVINEENSFLNNSVMILTYALMNDGVTGLKELAFLRDLAEQNSGKYGVPDRMALPVIK
GSMMVLNQLSNLETTVGRFYTNLPNRMIDEAVFSLPFSDEMGDGLIMTVSKPCYFGNLLLGIVGVDVNLA
YILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPPLHTDIIHYENIPKFELVRQNILSLPLGS
QIIAVPVNSSLSWHINKLRETGKEAYNVSYAWKMVQDTSFILCIVVIQPEIPVKQLKNLNTVPSSKLLYH
RLDLLGQPSACLHFKQLATLESPTIMLSAGSFSSPYEHLSQPETKRMVEHYTAYLSDNTRLIANPGLKFS
VRNEVMATSHVTDEWMTQMEMSSLNTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWYLHAVANPGLI
SLTGPYLDVGGAGYVVTISHTIHSSSTQLSSGHTVAVMGIDFTLRYFYKVLMDLLPVCNQDGGNKIRCFI
MEDRGYLVAHPTLIDPKGHAPVEQQHITHKEPLVANDILNHPNFVKKNLCNSFSDRTVQRFYKFNTSLAG
DLTNLVHGSHCSKYRLARIPGTNAFVGIVNETCDSLAFCACSMVDRLCLNCHRMEQNECECPCECPLEVN
ECTGNLTNAENRNPSCEVHQEPVTYTAIDPGLQDALHQCVNSRCSQRLESGDCFGVLDCEWCMVDSDGKT
HLDKPYCAPQKECFGGIVGAKSPYVDDMGAIGDEVITLNMIKSAPVGPVAGGIMGCIMVLVLAVYAYRHQ
IHRRSHQHMSPLAAQEMSVRMSNLENDRDERDDDSHEDRGIISNTRFIAAVIERHAHSPERRRRYWGRSG
TESDHGYSTMSPQEDSENPPCNNDPLSAGVDVGNHDEDLDLDTPPQTAALLSHKFHHYRSHHPTLHHSHH
LQAAVTVHTVDAEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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