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Report for CCDS32492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32492.1 Public Homo sapiens 16 VAT1L 24 110 108 CCDS HistoryNCBI Gene:57687Re-query CCDS DB by CCDS ID:32492.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32492.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302536.3 ENSP00000303129.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302536.3Link to Ensembl Protein Viewer:ENSP00000303129.2Re-query CCDS DB by Nucleotide ID:ENST00000302536Re-query CCDS DB by Protein ID:ENSP00000303129
Original member Current member NCBI NM_020927.3 NP_065978.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020927.3Link to Protein Sequence:NP_065978.1Re-query CCDS DB by Nucleotide ID:NM_020927Re-query CCDS DB by Protein ID:NP_065978Link to BLAST:NP_065978.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065978.1 419 Q9HCJ6 419 100% 0 0

Chromosomal Locations for CCDS 32492.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 77788683 77788915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77816921 77817050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77825246 77825461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77862748 77862890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77876370 77876473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77879169 77879224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77884608 77884802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77971850 77971933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 77977597 77977695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCCAAGGAAGGCGTGGAGAAGGCGGAGGAGACGGAGCAAATGATCGAGAAGGAGGCAGGCAAGGAGC
CGGCGGAGGGCGGCGGCGGCGACGGCTCGCACCGCCTCGGGGACGCCCAGGAGATGCGCGCGGTGGTGCT
GGCTGGCTTCGGGGGGCTCAACAAGCTGCGGCTCTTCAGGAAGGCCATGCCCGAGCCTCAGGACGGCGAG
CTCAAGATCCGCGTCAAAGCCTGTGGATTAAACTTCATTGACTTGATGGTGCGACAAGGGAATATTGACA
ACCCTCCCAAGACTCCCCTGGTGCCAGGATTTGAGTGTTCTGGGATTGTTGAAGCTCTGGGGGACAGCGT
GAAAGGATATGAGATTGGAGACCGTGTCATGGCATTTGTCAATTACAATGCCTGGGCAGAGGTGGTCTGC
ACACCAGTGGAGTTTGTCTACAAGATCCCGGATGACATGAGCTTCTCCGAGGCTGCTGCATTCCCCATGA
ACTTCGTCACAGCCTATGTGATGCTGTTTGAAGTTGCCAACCTCCGGGAAGGGATGTCTGTGCTCGTGCA
CTCAGCTGGTGGGGGCGTGGGTCAAGCTGTGGCTCAGCTGTGTTCCACTGTCCCCAACGTGACTGTCTTT
GGAACAGCCTCTACTTTCAAGCATGAAGCAATCAAAGACTCTGTGACCCACCTCTTTGACAGAAATGCAG
ACTACGTGCAAGAAGTTAAAAGAATCTCTGCTGAAGGTGTGGACATCGTTTTGGATTGCCTCTGTGGGGA
CAACACTGGAAAAGGTCTCAGTCTTCTCAAACCCCTGGGAACCTACATTTTATATGGCTCATCCAACATG
GTAACTGGAGAGACCAAGAGCTTCTTCAGCTTTGCAAAATCATGGTGGCAGGTGGAGAAGGTGAACCCCA
TCAAGCTGTATGAGGAGAACAAAGTCATCGCGGGGTTTTCCCTTTTAAATCTGCTCTTCAAACAAGGCCG
GGCGGGCCTCATTCGGGGAGTGGTGGAAAAACTCATAGGGCTCTACAACCAGAAGAAGATCAAGCCTGTG
GTGGACTCCTTGTGGGCTCTGGAGGAGGTGAAGGAGGCCATGCAGCGGATTCACGACCGAGGGAACATTG
GCAAGTTAATTCTGGATGTAGAAAAGACCCCAACTCCACTGATGGCCAATGACAGCACAGAGACCAGTGA
AGCAGGGGAAGAGGAGGAGGACCACGAGGGAGACAGCGAGAACAAGGAGCGGATGCCCTTTATCCAGTAA

Translation (419 aa):
MAKEGVEKAEETEQMIEKEAGKEPAEGGGGDGSHRLGDAQEMRAVVLAGFGGLNKLRLFRKAMPEPQDGE
LKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVC
TPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVF
GTASTFKHEAIKDSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYGSSNM
VTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPV
VDSLWALEEVKEAMQRIHDRGNIGKLILDVEKTPTPLMANDSTETSEAGEEEEDHEGDSENKERMPFIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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