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Report for CCDS22042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22042.1 Public Mus musculus 7 Phlda2 23 108 98 CCDS HistoryNCBI Gene:22113Re-query CCDS DB by CCDS ID:22042.1Re-query CCDS DB by GeneID:22113See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010904.4 ENSMUSP00000010904.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010904.4Link to Ensembl Protein Viewer:ENSMUSP00000010904.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000010904Re-query CCDS DB by Protein ID:ENSMUSP00000010904
Original member Current member NCBI NM_009434.2 NP_033460.1 Accepted alive Link to Nucleotide Sequence:NM_009434.2Link to Protein Sequence:NP_033460.1Re-query CCDS DB by Nucleotide ID:NM_009434Re-query CCDS DB by Protein ID:NP_033460Link to BLAST:NP_033460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033460.1 144 O08969 144 100% 0 0

Chromosomal Locations for CCDS 22042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143501816 143501816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143502057 143502490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGCTTCGAAAATCGTGATGTCTTCGAAAACCGTGAAGACCTCCGACGAGATCCTTTGCGAGGGCGAGC
TGGAGAAGCGAAGCGACAGCCTGTTCCAGGTATGGAAGAAGAAGCGCTGCGTGCTCACCGCCGACCGCCT
GCGCCTCTTCTCCGGGAAAACCAGCCCCGCCAAGGAGCTGTTTTTCCACTCCATCCTCAAGGTGGACTGC
GTGGAGCACACCTCTAAGTACGTGTACTTCACCATCGTCACCAACTATTACAAGGAGATCGACTTCCGCT
GCACGGTGGAGAGCTGCTGGAACGCGGCCATCACCATGGCGCTGATCGACTTCCAGAACCGTCGGGCGCT
GCAAGACTTTCCCCGCTACCGGTATCAGCGCTCTGAGTCTGAAATGCCTTCCGAGCCGGGAGAGCAGAGC
GCTCTGGGTCCGTGA

Translation (144 aa):
MASKIVMSSKTVKTSDEILCEGELEKRSDSLFQVWKKKRCVLTADRLRLFSGKTSPAKELFFHSILKVDC
VEHTSKYVYFTIVTNYYKEIDFRCTVESCWNAAITMALIDFQNRRALQDFPRYRYQRSESEMPSEPGEQS
ALGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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