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Report for CCDS26634.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26634.1 Public Mus musculus 13 Slc6a19 23 108 98 CCDS HistoryNCBI Gene:74338Re-query CCDS DB by CCDS ID:26634.1Re-query CCDS DB by GeneID:74338See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26634.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022048.5 ENSMUSP00000022048.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022048.5Link to Ensembl Protein Viewer:ENSMUSP00000022048.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022048Re-query CCDS DB by Protein ID:ENSMUSP00000022048
Original member Current member NCBI NM_028878.4 NP_083154.1 Accepted alive Link to Nucleotide Sequence:NM_028878.4Link to Protein Sequence:NP_083154.1Re-query CCDS DB by Nucleotide ID:NM_028878Re-query CCDS DB by Protein ID:NP_083154Link to BLAST:NP_083154.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083154.1 634 Q9D687 634 100% 0 0

Chromosomal Locations for CCDS 26634.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 73681629 73681832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73681995 73682157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73683918 73684077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73684195 73684399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73685765 73685921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73686066 73686194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73689045 73689157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73689501 73689611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73689716 73689897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73691681 73691818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73692947 73693087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 73700432 73700633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGGTGAGGCTTGTGCTGCCCAACCCTGGCCTAGAGGAGCGGATTCCATCTCTGGATGAGTTAGAGGTCA
TTGAAAAGGAAGAGGCCGGCTCCAGGCCCAAATGGGACAACAAGGCCCAGTACATGCTCACCTGTGTGGG
CTTTTGTGTGGGGCTGGGCAACGTGTGGCGCTTCCCCTACCTATGCCAGAGCCATGGAGGAGGGGCCTTC
ATGATCCCATTCCTCATCCTTCTGGTGTTCGAGGGAATTCCTTTGCTGTACCTGGAGTTTGCCATCGGTC
AGAGGCTACGCAAGGGCAGCATGGGTGTGTGGAGCTCCATCCACCCTGCTCTGAAGGGTATAGGCATCGC
CTCCATGTTCGTGTCCTTCATGGTGGGCCTGTACTACAACACCATCATCGCCTGGGTCATGTGGTACTTC
TTCAACTCCTTTCAGGAACCTCTGCCATGGAGTGAATGTCCACTCAACCAGAACCAGACAGGCTATGTGG
AAGAGTGTGCCAAGAGCTCTTCCGTGGACTACTTCTGGTACCGAGAGACTCTTAATATCTCCACTTCCAT
CAGTGACTCAGGCTCCATCCAGTGGTGGATCCTGCTCTGCCTGACATGTGCCTGGAGTGTGCTGTATGTG
TGTATTATCCGTGGCATCGAGACCACTGGGAAGGCTGTGTACATCACCTCCACCCTGCCCTATGTTGTAC
TGACCATCTTTCTCATCCGTGGCTTGACTCTGAAGGGTGCCACCAACGGCATTGTCTTCCTTTTCACACC
CAATATCACAGAGCTGAGCAACCCCAACACGTGGCTGGATGCAGGTGCTCAGGTCTTCTACTCCTTCTCA
CTGGCCTTCGGGGGCCTCATCTCCTTCTCCAGCTACAACTCTGTGCACAATAATTGTGAGATGGATTCTG
TGATCGTGTCTGTCATCAATGGCTTCACATCTGTGTATGCGGCCACCGTGGTCTACTCCATCATTGGCTT
CCGAGCCACTGAGCGCTTTGATGACTGTGTCAACACGAACATCCTGACCCTCATCAATGGGTTCGACCTG
CCGGAGGGCAATGTGACTTCAGAGAACTTTGAGGCCTACCAACAGTGGTGCAATGCCACTAATCCCCAGG
CCTATGCACAACTGAAGTTTCAGACCTGTGACATTAACAGCTTCCTTTCTGAGGGTGTGGAGGGCACAGG
CCTGGCCTTCATTGTCTTCACGGAAGCCATCACGAAGATGCCAGTGTCCCCACTGTGGTCGGTGCTCTTT
TTTATAATGCTCTTCTGCCTGGGACTCTCCTCCATGTTTGGGAACATGGAGGGTGTGGTCGTACCCCTTC
AGGACCTCAATATCACCCCTAAGAAGTGGCCCAAAGAATTGTTGACAGGCCTCATCTGCTTGGGGACATA
TCTCATCGCCTTCATTTTCACACTGAATTCGGGCCAGTACTGGCTCTCTCTCCTGGACAGCTTTGCTGGC
TCCATTCCTCTGCTAATCATCGCCTTTTGTGAGATGTTTGCCGTCGTCTACGTGTATGGAGTTGACAGGT
TCAACAAGGACATCGAGTTCATGATCGGCCATAAGCCCAACATCTTCTGGCAAGTCACGTGGAGAGTGGT
CAGTCCACTGATCATGCTGGTCATCTTCCTCTTCTTTTTTGTGATTGAGGTCAACAAAACGCTCATGTAT
AGCATCTGGGACCCTAACTATGAGGAGTTCCCGAAATCTCAGAAGATTCCATACCCCAACTGGGTGTATG
CAGTTGTGGTCACTGTGGCTGGAGTACCCTGCCTCTCCATCCCCTGCTTTGCCATCTACAAGTTCATCAG
AAATTGTTGTCAGAAGTCTGATGACCACCATGGGCTGGTCAATACACTGTCCACAGCCTCTGTGAATGGG
GACCTTAAGAACTGA

Translation (634 aa):
MVRLVLPNPGLEERIPSLDELEVIEKEEAGSRPKWDNKAQYMLTCVGFCVGLGNVWRFPYLCQSHGGGAF
MIPFLILLVFEGIPLLYLEFAIGQRLRKGSMGVWSSIHPALKGIGIASMFVSFMVGLYYNTIIAWVMWYF
FNSFQEPLPWSECPLNQNQTGYVEECAKSSSVDYFWYRETLNISTSISDSGSIQWWILLCLTCAWSVLYV
CIIRGIETTGKAVYITSTLPYVVLTIFLIRGLTLKGATNGIVFLFTPNITELSNPNTWLDAGAQVFYSFS
LAFGGLISFSSYNSVHNNCEMDSVIVSVINGFTSVYAATVVYSIIGFRATERFDDCVNTNILTLINGFDL
PEGNVTSENFEAYQQWCNATNPQAYAQLKFQTCDINSFLSEGVEGTGLAFIVFTEAITKMPVSPLWSVLF
FIMLFCLGLSSMFGNMEGVVVPLQDLNITPKKWPKELLTGLICLGTYLIAFIFTLNSGQYWLSLLDSFAG
SIPLLIIAFCEMFAVVYVYGVDRFNKDIEFMIGHKPNIFWQVTWRVVSPLIMLVIFLFFFVIEVNKTLMY
SIWDPNYEEFPKSQKIPYPNWVYAVVVTVAGVPCLSIPCFAIYKFIRNCCQKSDDHHGLVNTLSTASVNG
DLKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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