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Report for CCDS18365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18365.1 Public Mus musculus 4 Fggy 23 108 98 CCDS HistoryNCBI Gene:75578Re-query CCDS DB by CCDS ID:18365.1Re-query CCDS DB by GeneID:75578See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18365.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043335.10 ENSMUSP00000043460.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043335.10Link to Ensembl Protein Viewer:ENSMUSP00000043460.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000043335Re-query CCDS DB by Protein ID:ENSMUSP00000043460
Original member Current member NCBI NM_029347.2 NP_083623.1 Accepted alive Link to Nucleotide Sequence:NM_029347.2Link to Protein Sequence:NP_083623.1Re-query CCDS DB by Nucleotide ID:NM_029347Re-query CCDS DB by Protein ID:NP_083623Link to BLAST:NP_083623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083623.1 387 A2AJL3-2 387 100% 0 0

Chromosomal Locations for CCDS 18365.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 95585244 95585447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95597623 95597734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95600965 95601116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95623481 95623569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95696960 95697075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95738789 95738917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95769426 95769529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95800557 95800664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95812108 95812169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 95820882 95820969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGATGTCTGGCAGAGACCAGGAACCAAGTCGCTACTATGTGGGCATCGATGTGGGAACAGGTAGTGTCC
GTGCGGCTCTAGTGGACCAGAGAGGGCTCCTTTTGGCTTTCGCAGAGCAGCCAATTAAGAAGTGGGAGCC
TCAATTCAACCACCACGAGCAGTCCTCAGAGGATATCTGGGCGGCATGCTGCCTTGTCACAAAGGAAGTT
GTTCAAGGGATTGATGCACATCGAATCCGAGGACTTGGTTTTGATGCCACGTGTTCTCTGGTTGTCTTGG
ATAAAGAGTTCCATCCTTTACCAGTAAACCATGAAGGGGACTCCTCTCGAAACGTTATCATGTGGCTGGA
CCACCGGGCTGTCAGCCAGGTCCACAGGATTAATGAGACCAAGCACAGAGTCCTTCAGTATGTGGGTGGT
GTGATGTCTGTGGAGATGCAGGCTCCAAAGCTCCTGTGGCTGAAGGAGAACTTGAGAGAGATTTGCTGGG
ATAAGGCGGGACATTTCTTTGATCTCCCAGACTTCTTATCATGGAAGGCAACAGGTGTCACAGCACGGTC
TCTCTGCTCCTTGGTGTGCAAATGGACATACTCAGCAGAGAAAGGTTGGGATGACAGCTTCTGGAAGATG
ATTGGACTGGAAGATCTCATTGATGATAATTACAGCAAAATAGGAAACCTCGTGTTGCTTCCTGGAGCTG
CTCTTGGAATTGGGCTCACACCAGAAGCAGCCAGAGAGCTGGGTCTTCCTTCAGGAATTGCAGTGGCAGC
CTCACTCATTGATGCCCATGCAGGAGGACTAGGAGTGATTGGGGCAGATGTGAGAGGTCACGGGCTTACC
TGTGAGGGACAGCCAGTGACGTCAAGGCTGGCTGTCATCTGTGGAACATCATCTTGTCACATGGGGATCA
GCAAAGATCCAGTGTTTGTACCAGGTGTCTGGGGACCTTATTATTCAGCCATGGTCCCTGGGTTCTGGTT
GAATGAAGGTGGTCAGAGTGTGACTGGAAAATTGATAGACCATATGGTGCAGGGCCATCCTGCCTTTCCT
GAACTACAAGCCAAGGCCACAGCCAGAAACCTACAGAAACATCATGGTATCCATGGGGACACTCCTGGCA
TTGCAAAATATGAACTTGAAGTCACTTCTTCTAAAGCATTTTAA

Translation (387 aa):
MMSGRDQEPSRYYVGIDVGTGSVRAALVDQRGLLLAFAEQPIKKWEPQFNHHEQSSEDIWAACCLVTKEV
VQGIDAHRIRGLGFDATCSLVVLDKEFHPLPVNHEGDSSRNVIMWLDHRAVSQVHRINETKHRVLQYVGG
VMSVEMQAPKLLWLKENLREICWDKAGHFFDLPDFLSWKATGVTARSLCSLVCKWTYSAEKGWDDSFWKM
IGLEDLIDDNYSKIGNLVLLPGAALGIGLTPEAARELGLPSGIAVAASLIDAHAGGLGVIGADVRGHGLT
CEGQPVTSRLAVICGTSSCHMGISKDPVFVPGVWGPYYSAMVPGFWLNEGGQSVTGKLIDHMVQGHPAFP
ELQAKATARNLQKHHGIHGDTPGIAKYELEVTSSKAF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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