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Report for CCDS35254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35254.1 Public Homo sapiens X PPP1R3F 24 110 108 CCDS HistoryNCBI Gene:89801Re-query CCDS DB by CCDS ID:35254.1Re-query CCDS DB by GeneID:89801See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000055335.11 ENSP00000055335.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000055335.11Link to Ensembl Protein Viewer:ENSP00000055335.6Re-query CCDS DB by Nucleotide ID:ENST00000055335Re-query CCDS DB by Protein ID:ENSP00000055335
Original member Current member NCBI NM_033215.5 NP_149992.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033215.5Link to Protein Sequence:NP_149992.3Re-query CCDS DB by Nucleotide ID:NM_033215Re-query CCDS DB by Protein ID:NP_149992Link to BLAST:NP_149992.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149992.3 799 Q6ZSY5-1 799 100% 0 0

Chromosomal Locations for CCDS 35254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49269870 49270873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49281406 49281461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49281981 49282063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49285834 49287090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2400 nt):
ATGGCGCGTACGGCCCCTGTGGAGCCCCCGCTGCGGCATTCCGCGCCCCCCTCGCCGGCCGCGGGTGAGC
CCCGCACCTCGGTCGAGGCGGCGGTGGCCCCGCGGAGGGTGCTGTTCGCCGACGAGGCCTTGGGGCTGCC
GCTGGCGCAGTTGCGCCGCTACCGGCCGTGGGGCGGGCCCGGGGCGGGCAAGATGGCGGCGGCGGCCGGG
CAAGATGGCGGCGGCGGCGGCGGGGCCGACGAGGACGACGATGGCGAGGATGGGGATGAAGGGGAGGAGG
AAGAGGAGGCTTGCCCCGAGCCCTCACCGCTGTGCCCCGTCCCCGCTGGCGGGGGGTTTTACCTGGTCCC
CACATTTTCGCTGCCGCCCGCGCCGGGCCGTCTGGAGCGCTTGGGGCGCGTCATGGTGGAGCTGGAGGCG
CTGCTGCCGCCTCCCGGAGCGGTCCCCGGGGGTGCCGGGGTGTGGGTGCCTGGGGGCCGCCCGCCGGTGC
TGCGCGGGTTGGTACGCGTGCTGAACCGCTCCTTCGAGAAGGCGGTGCACGTGCGGGCCTCACACGACGG
CTGGGCTTCCTTTTGCGACCACCCAGCGCGCTACGTCCCGCGCAGCCCGCCGTGGGCAGGAGCGGGAGGA
ACAGGAGCAGGAGATCCCATCCTGGATCCGGGGCTCGGCCTGGGTCCCGGCCAGGCATCCGCCTCCTCGC
CCGACGACGGCGGCCGCACCGACCGCTTTGCCTTCCAGCTGCCCTTTGCTGAGGGCGCGGGCGATGGGGC
GCGCCTCGACTTCGTGGTGCGCTATGAGACCCCTGAGGGCACTTTCTGGGCCAACAACCACGGCCGCAAC
TACACAGTCCTGCTCCGGATCGCACCCGCTCCCACACCCACTGATGCCGAAGGGCTGCCCCAGCAGCAGC
AGCTGCCGCAGCTGGAGCCACAGCCCGAGTGCCAGGGTCCCGTGGAGGCTGAGGCCAGGCAGCTGAAGAG
CTGCATGAAGCCGGTGAGGCGCAGGCCTGCCGAGGAGGAACTGAAGACGAAGAACATGGATGATAACACC
TTTGCCATGGCAGAGCATCCTGATGTCCAGGAGTCAGTGGGTCCACTGGTAGCCCCCACCCCTCTCCGTC
CATGGCCCCAGATGACACTTCAGGTTTCTGACGTTCCGATGACTGGCAACCCCGCAGAAGAAGGTGATGT
CCCCAGAAGCAGTCCACCTGTGGCTTTTACAGAGGTCCTCCAGGCACCGGCCATCAGGATTCCCCCCTCC
TCCCCTCTCTGTGGCCTGGGTGGCTCCCCCAGAGACCAGGCCTCAGGGCCCGATGCGAGCGAGGGGGCCA
CCGGGCCTTTCCTGGAGCCCAGTCAGCAGCAGGCAGAGGCCACATGGGGAGTATCGAGTGAGAATGGAGG
GGGGCTGGAGGCTGTGAGTGGGTCAGAGGAGCTGCTCGGTGAGGACACCATCGACCAGGAGCTGGAGCAG
CTCTACCTGTCTCACCTGAGCCGCCTACGGGCTGCTGTGGCTGCGGGTGGGGCAGGGGGTGGTGGGGAGG
GCTCCACAGATGGAGGGATGTCCCCCAGCCATCCCCTGGGCATACTGACGGACCGCGACCTGATCTTGAA
GTGGCCTGGCCCTGAGCGGGCCCTGAACAGCGCCCTGGCTGAGGAGATCACGCTGCACTATGCCCGGCTG
GGGCGTGGCGTGGAGCTCATCAAGGACACCGAAGACCCTGATGATGAAGGGGAGGGTGAAGAGGGGCTCT
CTGTCACACCCTCCAGCCCAGAAGGGGACAGCCCCAAGGAATCGCCTCCAGAAATCCTCTCCGGGGCCCG
TTCTGTGGTAGCCACGATGGGAGATGTGTGGCTCCCATGGGCAGAGGGCTCAGGATGTGACGGCCCTGTG
GTTCTGGGTACAGAGGGTCAGTTCATTGGGGATCCTGAGAAAGGGATGGGCAAGGACACCAGCTCTTTGC
ACATGAATAGGGTGATAGCTGGGGTGACTGAGTCCCTGGGGGAGGCCGGGACAGAAGCCCAGATAGAGGT
CACCAGTGAGTGGGCAGGCAGCTTGGATCCCATATCTGGCAAGGAGCCAGCCTCTCCCGTCCTTCTGCAG
GGGCAAAATCCCACCCTCCTCAGTCCCTTGGGGGCCGAAGTCTGTCTCTCTAGTGTAGCCAGGCCTCATG
TGAGCTCCCAGGATGAAAAGGATGCAGGCCCAAGCCTTGAACCCCCAAAGAAGTCTCCCACCCTAGCAGT
CCCTGCAGAATGTGTGTGTGCACTGCCTCCTCAGCTCCGGGGGCCCTTGACCCAGACTCTGGGGGTCCTG
GCCGGGCTAGTGGTGGTCCCTGTGGCTCTGAACAGCGGTGTGTCCCTCCTGGTGCTTGCGCTGTGCCTCT
CTCTGGCTTGGTTCTCATAG

Translation (799 aa):
MARTAPVEPPLRHSAPPSPAAGEPRTSVEAAVAPRRVLFADEALGLPLAQLRRYRPWGGPGAGKMAAAAG
QDGGGGGGADEDDDGEDGDEGEEEEEACPEPSPLCPVPAGGGFYLVPTFSLPPAPGRLERLGRVMVELEA
LLPPPGAVPGGAGVWVPGGRPPVLRGLVRVLNRSFEKAVHVRASHDGWASFCDHPARYVPRSPPWAGAGG
TGAGDPILDPGLGLGPGQASASSPDDGGRTDRFAFQLPFAEGAGDGARLDFVVRYETPEGTFWANNHGRN
YTVLLRIAPAPTPTDAEGLPQQQQLPQLEPQPECQGPVEAEARQLKSCMKPVRRRPAEEELKTKNMDDNT
FAMAEHPDVQESVGPLVAPTPLRPWPQMTLQVSDVPMTGNPAEEGDVPRSSPPVAFTEVLQAPAIRIPPS
SPLCGLGGSPRDQASGPDASEGATGPFLEPSQQQAEATWGVSSENGGGLEAVSGSEELLGEDTIDQELEQ
LYLSHLSRLRAAVAAGGAGGGGEGSTDGGMSPSHPLGILTDRDLILKWPGPERALNSALAEEITLHYARL
GRGVELIKDTEDPDDEGEGEEGLSVTPSSPEGDSPKESPPEILSGARSVVATMGDVWLPWAEGSGCDGPV
VLGTEGQFIGDPEKGMGKDTSSLHMNRVIAGVTESLGEAGTEAQIEVTSEWAGSLDPISGKEPASPVLLQ
GQNPTLLSPLGAEVCLSSVARPHVSSQDEKDAGPSLEPPKKSPTLAVPAECVCALPPQLRGPLTQTLGVL
AGLVVVPVALNSGVSLLVLALCLSLAWFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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