NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43487.1 Public Homo sapiens 6 PRDM13 24 110 108 CCDS HistoryNCBI Gene:59336Re-query CCDS DB by CCDS ID:43487.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369215.5 ENSP00000358217.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369215.5Link to Ensembl Protein Viewer:ENSP00000358217.5Re-query CCDS DB by Nucleotide ID:ENST00000369215Re-query CCDS DB by Protein ID:ENSP00000358217
Original member Current member NCBI NM_021620.4 NP_067633.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021620.4Link to Protein Sequence:NP_067633.2Re-query CCDS DB by Nucleotide ID:NM_021620Re-query CCDS DB by Protein ID:NP_067633Link to BLAST:NP_067633.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067633.2 707 Q9H4Q3 707 100% 0 0

Chromosomal Locations for CCDS 43487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 99607035 99607178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99608741 99608872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99609187 99609307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99613033 99614759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGCACGGAGCCGCCAGAGCGCCAGCCACCAGCGTGAGTGCCGACTGCTGCATCCCGGCCGGCTTGCGCC
TCGGACCGGTGCCTGGTACCTTCAAGCTGGGCAAGTACCTGTCAGACCGCAGGGAGCCCGGGCCTAAGAA
AAAGGTGCGCATGGTGAGAGGGGAGCTGGTGGACGAGTCGGGGGGCTCCCCTCTGGAGTGGATAGGGTTA
ATCCGGGCAGCCAGAAACTCCCAGGAACAGACTCTGGAAGCTATTGCAGACTTACCCGGAGGACAGATCT
TCTACCGAGCATTGCGAGACGTCCAGCCAGGGGAGGAGCTGACAGTGTGGTATTCTAACTCCTTGGCTCA
GTGGTTCGACATCCCCACCACAGCGACTCCGACTCACGACGAGAAAGGGGAGGAGCGCTACATCTGCTGG
TACTGCTGGAGGACGTTTAGATACCCCAACAGCCTTAAGGCACACCTGCGTTTCCACTGCGTGTTCAGCG
GCGGTGGAGGCGGCGCCTTCCTGCACCACGAACACGCGGCTCGCCAAGGCGCCGTCCCAGCGGCTGATGG
CCTCGGTCTCTCCCCAAAACCCCCGGCGCCCGATTTCGCCGCGCCTTCCCAGGCAGGAACTTTGCGACCC
CACCCCCTGGGCCCGCCACCAGTTCAGGCCTGCGGTGCGCGGGAGGGCATCAAGCGCGAGGCCTCTTCCG
CGCCCTCGGCCACCTCGCCGACCCCAGGCAAGTGGGGGCAGCCCAAGAAGGGCAAGGAGCAGCTGGACCG
TGCCCTGGACATGAGCGGAGCCGCCCGAGGACAAGGGCACTTCCTCGGCATCGTGGGCGGCTCCTCGGCG
GGGGTCGGCAGCCTGGCTTTCTACCCCGGCGTGCGCTCAGCTTTCAAGCCCGCCGGCCTAGCGAGGGCGG
CGGCGGCCGCTCACGGCGACCCCTACCGGGAGGAGAGCAGCAGCAAGCAAGGAGCCGGCCTCGCTTTGGG
CAGGCTGCTGGGCGGGGGCCGGGCGTGCGGGCGCCCCGGGAGCGGGGAGAACTCGGCGGCGGGCGGCGCG
GGTCACCACCATCACCACCACGCGCACCACCACCACCATCCCAAGTGCCTGCTCGCTGGGGACCCGCCGC
CGCCGCCGCCGCCTGGCCTGCCCTGCTCTGGGGCCCTGCGCGGCTTCCCTCTGCTCTCCGTCCCCCCGGA
AGAGGCGTCCGCCTTCAAGCACGTGGAGCGCGCCCCGCCCGCAGCCGCCGCGCTGCCAGGAGCGCGTTAT
GCGCAGCTGCCCCCTGCGCCGGGGTTGCCCCTCGAGCGCTGCGCGCTGCCGCCCCTCGACCCGGGCGGTC
TCAAAGCCTATCCGGGTGGTGAGTGCAGCCACCTGCCCGCCGTCATGCCGGCCTTTACAGTCTACAACGG
GGAGCTGCTCTACGGCTCACCGGCCACCACCGCTTATTACCCGCTCAAATTGCACTTCGGCGGGCTGCTG
AAGTATCCGGAGTCCATCTCCTACTTCAGCGGGCCTGCAGCGGCCGCCCTAAGCCCCGCCGAGCTGGGGT
CGCTGGCCAGCATCGACCGAGAGATCGCCATGCACAATCAGCAGCTGTCCGAGATGGCTGCCGGGAAGGG
TCGCGGACGCCTGGACTCGGGGACGTTGCCACCGGCCGTCGCGGCGGCGGGAGGCACCGGGGGCGGCGGC
AGCGGAGGCAGCGGCGCAGGTAAGCCCAAGACCGGCCACCTGTGCCTCTACTGTGGCAAGCTGTACTCGC
GCAAGTATGGGCTCAAGATCCACATGCGGACGCACACGGGCTACAAGCCACTCAAGTGCAAAGTCTGTCT
GCGGCCCTTCGGCGACCCCAGCAATCTCAACAAGCACATCCGGCTGCACGCCGAGGGCAATACGCCCTAC
CGCTGCGAGTTCTGCGGCAAGGTACTTGTGCGCCGCCGGGACCTGGAGCGACATGTCAAGTCCCGCCACC
CTGGCCAGAGTCTGCTCGCCAAAGCGGGCGACGGCCCGGGTGCCGAGCCCGGCTATCCCCCGGAGCCTGG
GGATCCCAAGAGCGACGACAGTGACGTGGACGTCTGCTTCACAGACGACCAGAGCGACCCCGAGGTTGGG
GGCGGCGGGGAGCGCGACTTGTAA

Translation (707 aa):
MHGAARAPATSVSADCCIPAGLRLGPVPGTFKLGKYLSDRREPGPKKKVRMVRGELVDESGGSPLEWIGL
IRAARNSQEQTLEAIADLPGGQIFYRALRDVQPGEELTVWYSNSLAQWFDIPTTATPTHDEKGEERYICW
YCWRTFRYPNSLKAHLRFHCVFSGGGGGAFLHHEHAARQGAVPAADGLGLSPKPPAPDFAAPSQAGTLRP
HPLGPPPVQACGAREGIKREASSAPSATSPTPGKWGQPKKGKEQLDRALDMSGAARGQGHFLGIVGGSSA
GVGSLAFYPGVRSAFKPAGLARAAAAAHGDPYREESSSKQGAGLALGRLLGGGRACGRPGSGENSAAGGA
GHHHHHHAHHHHHPKCLLAGDPPPPPPPGLPCSGALRGFPLLSVPPEEASAFKHVERAPPAAAALPGARY
AQLPPAPGLPLERCALPPLDPGGLKAYPGGECSHLPAVMPAFTVYNGELLYGSPATTAYYPLKLHFGGLL
KYPESISYFSGPAAAALSPAELGSLASIDREIAMHNQQLSEMAAGKGRGRLDSGTLPPAVAAAGGTGGGG
SGGSGAGKPKTGHLCLYCGKLYSRKYGLKIHMRTHTGYKPLKCKVCLRPFGDPSNLNKHIRLHAEGNTPY
RCEFCGKVLVRRRDLERHVKSRHPGQSLLAKAGDGPGAEPGYPPEPGDPKSDDSDVDVCFTDDQSDPEVG
GGGERDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH