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Report for CCDS3758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3758.1 Public Homo sapiens 4 USP38 24 110 108 CCDS HistoryNCBI Gene:84640Re-query CCDS DB by CCDS ID:3758.1Re-query CCDS DB by GeneID:84640See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3758.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307017.9 ENSP00000303434.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307017.9Link to Ensembl Protein Viewer:ENSP00000303434.4Re-query CCDS DB by Nucleotide ID:ENST00000307017Re-query CCDS DB by Protein ID:ENSP00000303434
Original member Current member NCBI NM_032557.6 NP_115946.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032557.6Link to Protein Sequence:NP_115946.2Re-query CCDS DB by Nucleotide ID:NM_032557Re-query CCDS DB by Protein ID:NP_115946Link to BLAST:NP_115946.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115946.2 1042 Q8NB14-1 1042 100% 0 0

Chromosomal Locations for CCDS 3758.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143185451 143186132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143187826 143187961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143195716 143195845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143197823 143197924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143203408 143203566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143206033 143206226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143209564 143209657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143212318 143212424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143213581 143214943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143220295 143220456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGGACAAGATCCTGGAGGGCCTTGTGAGTTCCTCGCATCCCCTGCCCCTCAAGCGGGTGATTGTGCGGA
AGGTGGTGGAATCGGCGGAGCACTGGCTAGACGAGGCGCAGTGCGAGGCCATGTTTGACCTGACGACCCG
GCTCATCCTGGAGGGCCAGGACCCTTTCCAGCGGCAGGTGGGGCACCAGGTGCTGGAGGCCTACGCACGA
TACCACCGGCCAGAGTTCGAGTCCTTCTTCAACAAGACCTTCGTGTTGGGCCTCCTTCATCAGGGCTACC
ACTCTCTGGACAGGAAGGATGTAGCCATCCTGGACTACATTCACAACGGCCTGAAGCTGATTATGAGCTG
TCCGTCGGTGCTGGATCTCTTTAGCCTCCTGCAGGTAGAGGTGTTACGGATGGTGTGTGAGAGGCCGGAG
CCGCAGCTCTGTGCCCGACTGAGCGACCTTCTGACCGACTTTGTGCAATGCATCCCCAAGGGGAAATTGT
CCATCACGTTCTGTCAACAGCTGGTTCGAACGATAGGCCATTTCCAGTGCGTGTCCACCCAGGAAAGAGA
GCTGCGGGAATATGTCTCCCAGGTGACAAAAGTGAGTAACTTGCTGCAGAACATCTGGAAGGCCGAGCCT
GCCACACTACTGCCTTCCCTGCAAGAAGTTTTTGCAAGCATCTCTTCCACAGATGCATCATTTGAACCTT
CTGTAGCATTGGCAAGCCTTGTGCAGCATATTCCTCTTCAGATGATTACAGTTCTCATCAGGAGCCTTAC
TACGGATCCAAATGTAAAAGATGCAAGTATGACCCAAGCCCTTTGCAGAATGATTGACTGGCTATCCTGG
CCATTGGCTCAGCATGTGGATACATGGGTAATTGCACTCCTGAAAGGACTGGCAGCTGTCCAGAAGTTTA
CTATTTTGATAGATGTTACTTTGCTGAAAATAGAACTGGTTTTTAATCGACTTTGGTTTCCTCTTGTGAG
ACCTGGTGCTCTTGCAGTTCTTTCTCACATGCTGCTTAGCTTTCAGCATTCTCCAGAGGCGTTCCATTTG
ATTGTTCCTCATGTGGTTAATTTGGTTCATTCTTTCAAAAATGATGGTCTGCCTTCAAGTACAGCCTTCT
TAGTACAATTAACAGAATTGATACACTGTATGATGTATCATTATTCTGGATTTCCAGATCTCTATGAACC
TATTCTGGAGGCAATAAAGGATTTTCCTAAGCCCAGTGAAGAGAAGATTAAGTTAATTCTCAATCAAAGT
GCCTGGACTTCTCAATCCAATTCTTTGGCGTCTTGCTTGTCTAGACTTTCTGGAAAATCTGAAACTGGGA
AAACTGGTCTTATTAACCTAGGAAATACATGTTATATGAACAGTGTTATACAAGCCTTGTTTATGGCCAC
AGATTTCAGGAGACAAGTATTATCTTTAAATCTAAATGGGTGCAATTCATTAATGAAAAAATTACAGCAT
CTTTTTGCCTTTCTGGCCCATACACAGAGGGAAGCATACGCACCTCGGATATTCTTTGAGGCTTCCAGAC
CTCCATGGTTTACTCCCAGATCACAGCAAGACTGTTCTGAATACCTCAGATTTCTCCTTGACAGGCTCCA
TGAAGAAGAAAAGATCTTGAAAGTTCAGGCCTCACACAAGCCTTCTGAAATTCTGGAATGCAGTGAAACT
TCTTTACAGGAAGTAGCTAGTAAAGCAGCAGTACTAACAGAGACCCCTCGTACAAGTGACGGTGAGAAGA
CTTTAATAGAAAAAATGTTTGGAGGAAAACTACGAACTCACATACGTTGTTTGAACTGCAGGAGTACCTC
ACAAAAAGTGGAAGCCTTTACAGATCTTTCGCTTGCCTTTTGTCCTTCCTCTTCTTTGGAAAACATGTCT
GTCCAAGATCCAGCATCATCACCCAGTATACAAGATGGTGGTCTAATGCAAGCCTCTGTACCCGGTCCTT
CAGAAGAACCAGTAGTTTATAATCCAACAACAGCTGCCTTCATCTGTGACTCACTTGTGAATGAAAAAAC
CATAGGCAGTCCTCCTAATGAGTTTTACTGTTCTGAAAACACTTCTGTCCCTAACGAATCTAACAAGATT
CTTGTTAATAAAGATGTACCTCAGAAACCAGGAGGTGAAACCACACCTTCAGTAACTGACTTACTAAATT
ATTTTTTGGCTCCAGAGATTCTTACTGGTGATAACCAATATTATTGTGAAAACTGTGCCTCTCTGCAAAA
TGCTGAGAAAACTATGCAAATCACGGAGGAACCTGAATACCTTATTCTTACTCTCCTGAGATTTTCATAT
GATCAGAAGTATCATGTGAGAAGGAAAATTTTAGACAATGTATCACTGCCACTGGTTTTGGAGTTGCCAG
TTAAAAGAATTACTTCTTTCTCTTCATTGTCAGAAAGTTGGTCTGTAGATGTTGACTTCACTGATCTTAG
TGAGAACCTTGCTAAAAAATTAAAGCCTTCAGGGACTGATGAAGCTTCCTGCACAAAATTGGTGCCCTAT
CTATTAAGTTCCGTTGTGGTTCACTCTGGTATATCCTCTGAAAGTGGGCATTACTATTCTTATGCCAGGA
ATATCACAAGTACAGACTCTTCATATCAGATGTACCACCAGTCTGAGGCTCTGGCATTAGCATCCTCCCA
GAGTCATTTACTAGGGAGAGATAGTCCCAGTGCAGTTTTTGAACAGGATTTGGAAAATAAGGAAATGTCA
AAAGAATGGTTTTTATTTAATGACAGTAGAGTGACATTTACTTCATTTCAGTCAGTCCAGAAAATTACGA
GCAGGTTTCCAAAGGACACAGCTTATGTGCTTTTGTATAAAAAACAGCATAGTACTAATGGTTTAAGTGG
TAATAACCCAACCAGTGGACTCTGGATAAATGGAGACCCACCTCTACAGAAAGAACTTATGGATGCTATA
ACAAAAGACAATAAACTATATTTACAGGAACAAGAGTTGAATGCTCGAGCCCGGGCCCTCCAAGCTGCAT
CTGCTTCATGTTCATTTCGGCCCAATGGATTTGATGACAACGACCCACCAGGAAGCTGTGGACCAACTGG
TGGAGGGGGTGGAGGAGGATTTAATACAGTTGGCAGACTCGTATTTTGA

Translation (1042 aa):
MDKILEGLVSSSHPLPLKRVIVRKVVESAEHWLDEAQCEAMFDLTTRLILEGQDPFQRQVGHQVLEAYAR
YHRPEFESFFNKTFVLGLLHQGYHSLDRKDVAILDYIHNGLKLIMSCPSVLDLFSLLQVEVLRMVCERPE
PQLCARLSDLLTDFVQCIPKGKLSITFCQQLVRTIGHFQCVSTQERELREYVSQVTKVSNLLQNIWKAEP
ATLLPSLQEVFASISSTDASFEPSVALASLVQHIPLQMITVLIRSLTTDPNVKDASMTQALCRMIDWLSW
PLAQHVDTWVIALLKGLAAVQKFTILIDVTLLKIELVFNRLWFPLVRPGALAVLSHMLLSFQHSPEAFHL
IVPHVVNLVHSFKNDGLPSSTAFLVQLTELIHCMMYHYSGFPDLYEPILEAIKDFPKPSEEKIKLILNQS
AWTSQSNSLASCLSRLSGKSETGKTGLINLGNTCYMNSVIQALFMATDFRRQVLSLNLNGCNSLMKKLQH
LFAFLAHTQREAYAPRIFFEASRPPWFTPRSQQDCSEYLRFLLDRLHEEEKILKVQASHKPSEILECSET
SLQEVASKAAVLTETPRTSDGEKTLIEKMFGGKLRTHIRCLNCRSTSQKVEAFTDLSLAFCPSSSLENMS
VQDPASSPSIQDGGLMQASVPGPSEEPVVYNPTTAAFICDSLVNEKTIGSPPNEFYCSENTSVPNESNKI
LVNKDVPQKPGGETTPSVTDLLNYFLAPEILTGDNQYYCENCASLQNAEKTMQITEEPEYLILTLLRFSY
DQKYHVRRKILDNVSLPLVLELPVKRITSFSSLSESWSVDVDFTDLSENLAKKLKPSGTDEASCTKLVPY
LLSSVVVHSGISSESGHYYSYARNITSTDSSYQMYHQSEALALASSQSHLLGRDSPSAVFEQDLENKEMS
KEWFLFNDSRVTFTSFQSVQKITSRFPKDTAYVLLYKKQHSTNGLSGNNPTSGLWINGDPPLQKELMDAI
TKDNKLYLQEQELNARARALQAASASCSFRPNGFDDNDPPGSCGPTGGGGGGGFNTVGRLVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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